miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 44289 0.7 0.500433
Target:  5'- uCCGCGccCGCcggGCCGGCGaggcggggagcgaCCGCgaGCGCGg -3'
miRNA:   3'- -GGUGCa-GCGa--CGGCCGC-------------GGCG--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 44542 0.72 0.38937
Target:  5'- gCCGuCGUCGUcGCCGGCGgCGgcgcccguugacguCACGCGg -3'
miRNA:   3'- -GGU-GCAGCGaCGGCCGCgGC--------------GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 44717 0.73 0.325553
Target:  5'- aCCGCGgcgaCGUcgGCCGGCGCCGC-CGg- -3'
miRNA:   3'- -GGUGCa---GCGa-CGGCCGCGGCGuGCgc -5'
10964 5' -62.7 NC_002794.1 + 44856 0.7 0.448869
Target:  5'- aCCACGUCGUcgaGCCGcagaCGCUGCAacuCGCGg -3'
miRNA:   3'- -GGUGCAGCGa--CGGCc---GCGGCGU---GCGC- -5'
10964 5' -62.7 NC_002794.1 + 46124 0.66 0.685963
Target:  5'- cCCGCGUCgGCUcccccguccgaGUCGGCGUCGaucgcccucuggauCGCGCa -3'
miRNA:   3'- -GGUGCAG-CGA-----------CGGCCGCGGC--------------GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 47404 0.73 0.325553
Target:  5'- cCCgaaGcCGCcGUCGGCGCCGuCGCGCGg -3'
miRNA:   3'- -GGug-CaGCGaCGGCCGCGGC-GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 47749 0.67 0.669919
Target:  5'- uCCACGUgGCgGCCguGGuCGCgGCacaACGCGc -3'
miRNA:   3'- -GGUGCAgCGaCGG--CC-GCGgCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 47952 0.73 0.339511
Target:  5'- gCGCGUCccgGC-GCCGGCugggcgaccGCCGCGCGCu -3'
miRNA:   3'- gGUGCAG---CGaCGGCCG---------CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 48061 0.67 0.660443
Target:  5'- gCACGgCGCUgaugGCCGGCcagcgggagcaGCCGC-CGCu -3'
miRNA:   3'- gGUGCaGCGA----CGGCCG-----------CGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 48599 0.75 0.262207
Target:  5'- gCGCGUCGCcGUCGGCGUCgGCcucagACGCGg -3'
miRNA:   3'- gGUGCAGCGaCGGCCGCGG-CG-----UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 48895 0.66 0.707487
Target:  5'- gCCAgCGUUGCcgcaGCuCGGgGCCGCucCGCa -3'
miRNA:   3'- -GGU-GCAGCGa---CG-GCCgCGGCGu-GCGc -5'
10964 5' -62.7 NC_002794.1 + 49012 0.73 0.312026
Target:  5'- cCCGCGcCGCggcgGCCgcGGCGUCGUccgGCGCGg -3'
miRNA:   3'- -GGUGCaGCGa---CGG--CCGCGGCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 49096 0.7 0.448869
Target:  5'- aCC-CGUCGC-GCCGGCGCUcggcguccuGCAC-CGg -3'
miRNA:   3'- -GGuGCAGCGaCGGCCGCGG---------CGUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 49225 0.67 0.668972
Target:  5'- gCCGCGcCGCcaacaggGCCgucgacgGGCGCC-CGCGCa -3'
miRNA:   3'- -GGUGCaGCGa------CGG-------CCGCGGcGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 49264 0.69 0.528557
Target:  5'- cCCACGacgggCGCUccaacgGCCcgGGCGCCGC-CGCc -3'
miRNA:   3'- -GGUGCa----GCGA------CGG--CCGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 49447 0.71 0.423799
Target:  5'- gCGCgGUCGUcGCCguGGCGCCGC-CGUGa -3'
miRNA:   3'- gGUG-CAGCGaCGG--CCGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 49505 0.71 0.443789
Target:  5'- gCCGuCGUCGCUcGCCGgguacauggguucgcGCGCCGCGaGCa -3'
miRNA:   3'- -GGU-GCAGCGA-CGGC---------------CGCGGCGUgCGc -5'
10964 5' -62.7 NC_002794.1 + 49825 0.68 0.603404
Target:  5'- gCCACGUCuGauagGCgaGGCGCCGCcauucCGCGu -3'
miRNA:   3'- -GGUGCAG-Cga--CGg-CCGCGGCGu----GCGC- -5'
10964 5' -62.7 NC_002794.1 + 49945 0.67 0.650947
Target:  5'- -gACGggcaggCGCUcCCGGuCGCCGguCGCGu -3'
miRNA:   3'- ggUGCa-----GCGAcGGCC-GCGGCguGCGC- -5'
10964 5' -62.7 NC_002794.1 + 52761 0.67 0.641438
Target:  5'- aCCGCGcCGCgGCCcGgGCCGCGggauCGUGa -3'
miRNA:   3'- -GGUGCaGCGaCGGcCgCGGCGU----GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.