miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 52911 0.69 0.519418
Target:  5'- gCCGcCGUCGCcGCCGccgucGCucgGCCGgCACGCGa -3'
miRNA:   3'- -GGU-GCAGCGaCGGC-----CG---CGGC-GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 53247 0.75 0.23448
Target:  5'- gCC-CGcCGC-GCCGGCGUCGCcGCGCGa -3'
miRNA:   3'- -GGuGCaGCGaCGGCCGCGGCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 53296 0.68 0.591088
Target:  5'- uCCAgGUgccgaGCggucgGCCGGCGCCGCGagaucggcucgaacCGCa -3'
miRNA:   3'- -GGUgCAg----CGa----CGGCCGCGGCGU--------------GCGc -5'
10964 5' -62.7 NC_002794.1 + 53756 0.76 0.214107
Target:  5'- gCCGcCGcCGCUGCCGGCGgcgggacgcCCGCgACGCGc -3'
miRNA:   3'- -GGU-GCaGCGACGGCCGC---------GGCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 53911 0.71 0.415629
Target:  5'- uCCuCGUCGCcGUCGGCGgCGC-CGCc -3'
miRNA:   3'- -GGuGCAGCGaCGGCCGCgGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 53967 0.66 0.735109
Target:  5'- gCGCGUcCGCUccGuCCGGCuGCCcCGCGCc -3'
miRNA:   3'- gGUGCA-GCGA--C-GGCCG-CGGcGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 55014 0.71 0.432063
Target:  5'- -gGCGUcCGCcGCC-GCGCCGC-CGCGa -3'
miRNA:   3'- ggUGCA-GCGaCGGcCGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 56311 0.71 0.432063
Target:  5'- gUCGCgGUCGCUGgCGGCcgugGCCGgCgACGCGg -3'
miRNA:   3'- -GGUG-CAGCGACgGCCG----CGGC-G-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 56513 0.67 0.631923
Target:  5'- cCCGCGggCGCU-CCGGCGCuCGUuccgguCGCc -3'
miRNA:   3'- -GGUGCa-GCGAcGGCCGCG-GCGu-----GCGc -5'
10964 5' -62.7 NC_002794.1 + 56913 0.67 0.641438
Target:  5'- gCCACGggcgccggGCUGCCGGCcUCGCAC-Ca -3'
miRNA:   3'- -GGUGCag------CGACGGCCGcGGCGUGcGc -5'
10964 5' -62.7 NC_002794.1 + 57153 0.74 0.274024
Target:  5'- cUCACGcUGCUGCgcaaGGCGCCGC-CGCa -3'
miRNA:   3'- -GGUGCaGCGACGg---CCGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 57391 0.72 0.361251
Target:  5'- cCUACGUCaccgGCU-CCGGCGCC-CGCGUGg -3'
miRNA:   3'- -GGUGCAG----CGAcGGCCGCGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 58004 0.76 0.204502
Target:  5'- gCCuuCGUCGCcGCCGGgGCCGC-CGCc -3'
miRNA:   3'- -GGu-GCAGCGaCGGCCgCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 58350 0.66 0.704694
Target:  5'- aCC-UGcCGCUcgGCCuGGCGCCGCccgacuuccaggagGCGCGc -3'
miRNA:   3'- -GGuGCaGCGA--CGG-CCGCGGCG--------------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 58455 0.74 0.268063
Target:  5'- gCCugGcCGC-GCUGGCGCUGCACGa- -3'
miRNA:   3'- -GGugCaGCGaCGGCCGCGGCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 58544 0.77 0.182113
Target:  5'- gCCGCGgcgcgcgCGCUGCUGGCGC-GCuGCGCGa -3'
miRNA:   3'- -GGUGCa------GCGACGGCCGCGgCG-UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 58861 0.74 0.292543
Target:  5'- gCuCGUCGCcGaCCGGCaGCCGUGCGCGc -3'
miRNA:   3'- gGuGCAGCGaC-GGCCG-CGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 58959 0.68 0.584473
Target:  5'- gCCGCucuUCGUggagGCCGaGCGCCuGCGCGaCGa -3'
miRNA:   3'- -GGUGc--AGCGa---CGGC-CGCGG-CGUGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 59150 0.71 0.399585
Target:  5'- gCCGCGUCGC-GCaCGacaCGCUGCugGCGc -3'
miRNA:   3'- -GGUGCAGCGaCG-GCc--GCGGCGugCGC- -5'
10964 5' -62.7 NC_002794.1 + 59208 0.7 0.492391
Target:  5'- gCACGUCgGCgucUCGGcCGCgGCGCGCGa -3'
miRNA:   3'- gGUGCAG-CGac-GGCC-GCGgCGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.