miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 59242 0.68 0.564724
Target:  5'- uUCGCGcUGCUGCCcuacgucGGCGagcaCGCGCGCc -3'
miRNA:   3'- -GGUGCaGCGACGG-------CCGCg---GCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 59288 0.67 0.669919
Target:  5'- uCCGC-UCGCcGCuCGaCGCCGCGCaGCGc -3'
miRNA:   3'- -GGUGcAGCGaCG-GCcGCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 59345 0.68 0.615752
Target:  5'- aCCACGcgcucuacaacggcUGCUGCgccaccaCGGCGCCGCGCcugcuGCGg -3'
miRNA:   3'- -GGUGCa-------------GCGACG-------GCCGCGGCGUG-----CGC- -5'
10964 5' -62.7 NC_002794.1 + 59659 0.66 0.679368
Target:  5'- gCCACGgCGCUGCaga-GCCGCcuGCGCc -3'
miRNA:   3'- -GGUGCaGCGACGgccgCGGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 59902 0.66 0.716759
Target:  5'- gCCGCGUgCGCaGCgacaugGGCGCC-CGCGUGc -3'
miRNA:   3'- -GGUGCA-GCGaCGg-----CCGCGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 59986 0.68 0.593926
Target:  5'- aCCGC-UgGCUGCgccaguucacCGGCGCCGaGCGCa -3'
miRNA:   3'- -GGUGcAgCGACG----------GCCGCGGCgUGCGc -5'
10964 5' -62.7 NC_002794.1 + 60042 0.66 0.725051
Target:  5'- gCCGucUCGCUGCucaccuuCGGcCGCCGCACcGUGc -3'
miRNA:   3'- -GGUgcAGCGACG-------GCC-GCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 60668 0.67 0.649996
Target:  5'- gCGCGcCGCcGCCgccuccgucgacgGGaGCCGCGCGCa -3'
miRNA:   3'- gGUGCaGCGaCGG-------------CCgCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 61521 0.69 0.537756
Target:  5'- -gACGgcgGCcGCCGGCgGCCGC-CGCGa -3'
miRNA:   3'- ggUGCag-CGaCGGCCG-CGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 61872 0.79 0.137039
Target:  5'- gCCGCG-CGCcgucGUCGGCGCCGCGCgGCGa -3'
miRNA:   3'- -GGUGCaGCGa---CGGCCGCGGCGUG-CGC- -5'
10964 5' -62.7 NC_002794.1 + 62507 0.66 0.679368
Target:  5'- -gGCGgCGCcGCCGGCGCCuC-CGCc -3'
miRNA:   3'- ggUGCaGCGaCGGCCGCGGcGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 62686 0.66 0.688784
Target:  5'- cCUGCGggugcaGCUGUguCGGCgGCCGCcgACGCGa -3'
miRNA:   3'- -GGUGCag----CGACG--GCCG-CGGCG--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 62747 0.71 0.407558
Target:  5'- cCCGCGgccgucUCGCU-CCGGCuccggcuguuucGCCGCGCGCc -3'
miRNA:   3'- -GGUGC------AGCGAcGGCCG------------CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 63011 0.71 0.423799
Target:  5'- gCACGUgGCUggaGCUGGUGCuCGCcuGCGCGc -3'
miRNA:   3'- gGUGCAgCGA---CGGCCGCG-GCG--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 63146 0.69 0.556313
Target:  5'- aCCGCGUgcacucccagcUGCUGCaCGGCcgagGCCGCgaaGCGg -3'
miRNA:   3'- -GGUGCA-----------GCGACG-GCCG----CGGCGug-CGC- -5'
10964 5' -62.7 NC_002794.1 + 63374 0.7 0.448869
Target:  5'- cCCGCGcCGCUGCCc-CGCCGCccCGCu -3'
miRNA:   3'- -GGUGCaGCGACGGccGCGGCGu-GCGc -5'
10964 5' -62.7 NC_002794.1 + 64813 0.69 0.510341
Target:  5'- gCCGCGgacggCgGCgaGCCGGCGCCGaCgaccggacgGCGCGg -3'
miRNA:   3'- -GGUGCa----G-CGa-CGGCCGCGGC-G---------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 66845 0.68 0.565661
Target:  5'- -gGCGcCGCcGUCGGCGCgGCGaggcCGCGg -3'
miRNA:   3'- ggUGCaGCGaCGGCCGCGgCGU----GCGC- -5'
10964 5' -62.7 NC_002794.1 + 66961 0.66 0.716759
Target:  5'- gCCGgcgaGUCGCUcGCCGGgGgaGCGuCGCGa -3'
miRNA:   3'- -GGUg---CAGCGA-CGGCCgCggCGU-GCGC- -5'
10964 5' -62.7 NC_002794.1 + 67040 0.74 0.274024
Target:  5'- gCCGCGUCGCggacCCGGCGuCCGUggGCu -3'
miRNA:   3'- -GGUGCAGCGac--GGCCGC-GGCGugCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.