miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 195609 0.71 0.435395
Target:  5'- cCCGCGcUgGCguccggcccaaacgGCCGGCgacgacgaGCCGCACGCa -3'
miRNA:   3'- -GGUGC-AgCGa-------------CGGCCG--------CGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 195292 0.67 0.631923
Target:  5'- cCCGCGcacCGCUGCaCGcacCGCCGCGuCGCc -3'
miRNA:   3'- -GGUGCa--GCGACG-GCc--GCGGCGU-GCGc -5'
10964 5' -62.7 NC_002794.1 + 195110 0.67 0.650947
Target:  5'- aCgGCGUCucguGC-GCCcGCGgCGCGCGCGg -3'
miRNA:   3'- -GgUGCAG----CGaCGGcCGCgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 194966 0.66 0.707487
Target:  5'- gCACGaacgccggcUCGUacagGCaCaGCGCCGCGCGCa -3'
miRNA:   3'- gGUGC---------AGCGa---CG-GcCGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 194855 0.69 0.528557
Target:  5'- gCCGCacCGuCUGCCcGCGCCGCGCGa- -3'
miRNA:   3'- -GGUGcaGC-GACGGcCGCGGCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 194759 0.66 0.725969
Target:  5'- cCCACGgCGaCUGCuccgagaaCGGCcgGCaCGCGCGCa -3'
miRNA:   3'- -GGUGCaGC-GACG--------GCCG--CG-GCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 194512 0.7 0.457407
Target:  5'- cCCGCGgccCGCgUGCCGccggcccagcaGCGCCGCcagcacgcccGCGCGg -3'
miRNA:   3'- -GGUGCa--GCG-ACGGC-----------CGCGGCG----------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 194157 0.7 0.457407
Target:  5'- cCCGCGagCcCUGCCGGCGCgccuucuccgucCGCACGUu -3'
miRNA:   3'- -GGUGCa-GcGACGGCCGCG------------GCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 194107 0.72 0.353898
Target:  5'- aCACGU-GCUG-CGGCaCCGCGCGCa -3'
miRNA:   3'- gGUGCAgCGACgGCCGcGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 194015 0.69 0.547009
Target:  5'- uUCGCGgccgcCGCcGCCGGCGCCucGCcCGCc -3'
miRNA:   3'- -GGUGCa----GCGaCGGCCGCGG--CGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 193811 0.66 0.716759
Target:  5'- cCCGC-UCGU--CUGGCGCCG-ACGCGu -3'
miRNA:   3'- -GGUGcAGCGacGGCCGCGGCgUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 193291 0.72 0.391713
Target:  5'- gCCGguaGUCGCcGuCCGcuccGCGCCGCACGCa -3'
miRNA:   3'- -GGUg--CAGCGaC-GGC----CGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 192636 0.69 0.547009
Target:  5'- -gGCGgcCGCUccaGCCGcGcCGCCGCGCGCu -3'
miRNA:   3'- ggUGCa-GCGA---CGGC-C-GCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 192554 0.67 0.660443
Target:  5'- gCC-CGUCGUaG-CGGCaGgCGCACGCGa -3'
miRNA:   3'- -GGuGCAGCGaCgGCCG-CgGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 192422 0.74 0.268063
Target:  5'- gCCGCGacgggucCGCgGCCGGCGCguCGCGCGCc -3'
miRNA:   3'- -GGUGCa------GCGaCGGCCGCG--GCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 192315 0.71 0.432063
Target:  5'- uCCGCGcUCGCcGCCGcCGCCGCuuccuccucuuCGCGg -3'
miRNA:   3'- -GGUGC-AGCGaCGGCcGCGGCGu----------GCGC- -5'
10964 5' -62.7 NC_002794.1 + 192222 0.68 0.569412
Target:  5'- gCGCGacgaagaagaucggCGCUGCCGuCGCCGacgGCGCGg -3'
miRNA:   3'- gGUGCa-------------GCGACGGCcGCGGCg--UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 192134 0.7 0.483526
Target:  5'- gCUGCuGUugcUGCUGCCGGCGCgGU-CGCGg -3'
miRNA:   3'- -GGUG-CA---GCGACGGCCGCGgCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 191487 0.66 0.723213
Target:  5'- gCCACGggcgaUCGUccgccaccgagaggUGCCaGCGCCGgGCGuCGg -3'
miRNA:   3'- -GGUGC-----AGCG--------------ACGGcCGCGGCgUGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 190660 0.73 0.325553
Target:  5'- aUCACGUCGCgcccGCC-GCGCCGCcgggucuccACGCa -3'
miRNA:   3'- -GGUGCAGCGa---CGGcCGCGGCG---------UGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.