miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 190461 0.66 0.725969
Target:  5'- gCgGCGUCGC-GCCcgacgcccacgGGUGCCcCACGCc -3'
miRNA:   3'- -GgUGCAGCGaCGG-----------CCGCGGcGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 190352 0.67 0.650947
Target:  5'- gUCAgGUCGUcgGCCGcGCGgCGCA-GCGg -3'
miRNA:   3'- -GGUgCAGCGa-CGGC-CGCgGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 190196 0.79 0.137039
Target:  5'- uCCACG-CGCU-CCaGCGCCGCGCGCa -3'
miRNA:   3'- -GGUGCaGCGAcGGcCGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 190149 0.66 0.720451
Target:  5'- aCGCGUacUGCUGgCGGCGgcucuccucgaacacCCGC-CGCGc -3'
miRNA:   3'- gGUGCA--GCGACgGCCGC---------------GGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 189899 0.66 0.725969
Target:  5'- cCCGcCGUCaGCgccGCCGcGCGaCCGCcCGCu -3'
miRNA:   3'- -GGU-GCAG-CGa--CGGC-CGC-GGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 188541 0.67 0.669919
Target:  5'- gCAggUGUCGCggcgGCgGGUacugcuGCCGCACGUGc -3'
miRNA:   3'- gGU--GCAGCGa---CGgCCG------CGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 188327 0.74 0.305424
Target:  5'- uCCuCGUCGCcGCCgccggcGGCGCCGuCGCGCc -3'
miRNA:   3'- -GGuGCAGCGaCGG------CCGCGGC-GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 188275 0.7 0.466031
Target:  5'- gCCGgGUaGCggaUGCagGGCGCCGCGCGCc -3'
miRNA:   3'- -GGUgCAgCG---ACGg-CCGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 187908 0.67 0.669919
Target:  5'- gCCGC-UCGCccGCCGGgcccCGCCGCGaccguCGCGu -3'
miRNA:   3'- -GGUGcAGCGa-CGGCC----GCGGCGU-----GCGC- -5'
10964 5' -62.7 NC_002794.1 + 187844 0.66 0.679368
Target:  5'- gCGCGcCGagggcuCUGCCca-GCCGCGCGCGg -3'
miRNA:   3'- gGUGCaGC------GACGGccgCGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 187743 0.72 0.371723
Target:  5'- gCAcCGUCGCcaucuccgaacgccGCCGGCGCCGguCGCc -3'
miRNA:   3'- gGU-GCAGCGa-------------CGGCCGCGGCguGCGc -5'
10964 5' -62.7 NC_002794.1 + 187593 0.67 0.622409
Target:  5'- gCCGcCGUCGCgacGcCCGGCGUCGCccagagcCGCu -3'
miRNA:   3'- -GGU-GCAGCGa--C-GGCCGCGGCGu------GCGc -5'
10964 5' -62.7 NC_002794.1 + 187444 0.72 0.38317
Target:  5'- gCCGCGcCGuCUGCCgccgcucGGCGUCGCucgGCGCGc -3'
miRNA:   3'- -GGUGCaGC-GACGG-------CCGCGGCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 187315 0.69 0.537756
Target:  5'- aCCACGUCGCgggguuccgcaGCCGGagcagcagccCGUCGUuCGCGg -3'
miRNA:   3'- -GGUGCAGCGa----------CGGCC----------GCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 187061 0.66 0.698159
Target:  5'- cCCGCG--GCccGCCaGGUGCCGCAgGCu -3'
miRNA:   3'- -GGUGCagCGa-CGG-CCGCGGCGUgCGc -5'
10964 5' -62.7 NC_002794.1 + 186954 0.66 0.715835
Target:  5'- cCCGgGcCGCUgGCCGcCGCCuccagcaGCGCGCGc -3'
miRNA:   3'- -GGUgCaGCGA-CGGCcGCGG-------CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 186852 0.66 0.688784
Target:  5'- gCGCGggCGCUGCCGuGCaGCaGCA-GCGg -3'
miRNA:   3'- gGUGCa-GCGACGGC-CG-CGgCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 186721 0.67 0.656646
Target:  5'- gCC-CGUCGCUGCUauagcugcccaccGCGCCgaGCACGUa -3'
miRNA:   3'- -GGuGCAGCGACGGc------------CGCGG--CGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 186378 0.68 0.584473
Target:  5'- gCCGcCGUCGUcGCC-GCaGCCGCAgcCGCGg -3'
miRNA:   3'- -GGU-GCAGCGaCGGcCG-CGGCGU--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 186292 0.75 0.256456
Target:  5'- aCCGCGgccagGCgGCCGGuCGCCGCgGCGCGc -3'
miRNA:   3'- -GGUGCag---CGaCGGCC-GCGGCG-UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.