miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 185752 0.73 0.325553
Target:  5'- aCGCGUCcaGCcGCCGGCGCgGC-CGCc -3'
miRNA:   3'- gGUGCAG--CGaCGGCCGCGgCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 185336 0.76 0.209257
Target:  5'- cCCGCGUCGaCcGCuCGcGCGCCGC-CGCGa -3'
miRNA:   3'- -GGUGCAGC-GaCG-GC-CGCGGCGuGCGC- -5'
10964 5' -62.7 NC_002794.1 + 185220 0.66 0.735109
Target:  5'- gCCGCGgagagUCGC-GCCGacCGCCGCGCaCGa -3'
miRNA:   3'- -GGUGC-----AGCGaCGGCc-GCGGCGUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 185162 0.73 0.332479
Target:  5'- aCGCGUC-CUccGCCGGCGCgGCGCGg- -3'
miRNA:   3'- gGUGCAGcGA--CGGCCGCGgCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 184640 0.66 0.698159
Target:  5'- uCgGCGUCGC-GUCGGCGgCGUA-GCa -3'
miRNA:   3'- -GgUGCAGCGaCGGCCGCgGCGUgCGc -5'
10964 5' -62.7 NC_002794.1 + 184451 0.72 0.36871
Target:  5'- gCGCGcCGCUGCCGcccgcGgGCCGCGCGa- -3'
miRNA:   3'- gGUGCaGCGACGGC-----CgCGGCGUGCgc -5'
10964 5' -62.7 NC_002794.1 + 184049 0.68 0.603404
Target:  5'- gCGCgGUCGCggGCCgcGGCgaaGCgGCACGCGc -3'
miRNA:   3'- gGUG-CAGCGa-CGG--CCG---CGgCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 184013 0.67 0.669919
Target:  5'- uCCACcaUCGCcgGCCgccacGGCaCCGCGCGCa -3'
miRNA:   3'- -GGUGc-AGCGa-CGG-----CCGcGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 183684 0.67 0.641438
Target:  5'- aCGgGUCGagcGCC--CGCCGCGCGCGg -3'
miRNA:   3'- gGUgCAGCga-CGGccGCGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 183611 0.77 0.190796
Target:  5'- gCCGCG-CGCgGCCGGCGCCccCGCGCc -3'
miRNA:   3'- -GGUGCaGCGaCGGCCGCGGc-GUGCGc -5'
10964 5' -62.7 NC_002794.1 + 183519 0.7 0.492391
Target:  5'- cCCAUGUCGCgGCCGuGCGCgccccgucCGCccggggacacuGCGCGc -3'
miRNA:   3'- -GGUGCAGCGaCGGC-CGCG--------GCG-----------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 183195 0.66 0.679368
Target:  5'- aCGCGcCGCcacGCCGGCGgCGCGuucguCGCc -3'
miRNA:   3'- gGUGCaGCGa--CGGCCGCgGCGU-----GCGc -5'
10964 5' -62.7 NC_002794.1 + 182998 0.73 0.318736
Target:  5'- gCGCuUCGCcGCgGGCGCCccGCGCGCGc -3'
miRNA:   3'- gGUGcAGCGaCGgCCGCGG--CGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 182549 0.66 0.707487
Target:  5'- aCUGCGcCGCgGCCGGCaCCGuCAC-CGg -3'
miRNA:   3'- -GGUGCaGCGaCGGCCGcGGC-GUGcGC- -5'
10964 5' -62.7 NC_002794.1 + 181867 0.67 0.660443
Target:  5'- aUCACGcucCGCUGCCccGGgGUCGCgaacaggcgacaGCGCGg -3'
miRNA:   3'- -GGUGCa--GCGACGG--CCgCGGCG------------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 181739 0.66 0.735109
Target:  5'- aCACG-CGCgagcgGCCGGCcagcCCGCugACGCc -3'
miRNA:   3'- gGUGCaGCGa----CGGCCGc---GGCG--UGCGc -5'
10964 5' -62.7 NC_002794.1 + 181518 0.67 0.618604
Target:  5'- uCCACGUCGUccguucgcccgccGCCGGCggGCCG-GCGCu -3'
miRNA:   3'- -GGUGCAGCGa------------CGGCCG--CGGCgUGCGc -5'
10964 5' -62.7 NC_002794.1 + 180901 0.67 0.647145
Target:  5'- gCCGCGgacucggcCGCggucucGCCGGCGCCGUcggaggucggucuCGCGu -3'
miRNA:   3'- -GGUGCa-------GCGa-----CGGCCGCGGCGu------------GCGC- -5'
10964 5' -62.7 NC_002794.1 + 180683 0.66 0.679368
Target:  5'- gCCG-GcCGCUcCCGGCGCCcgGCGgGCGg -3'
miRNA:   3'- -GGUgCaGCGAcGGCCGCGG--CGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 180588 0.69 0.537756
Target:  5'- cCCACGgcagcaGCUGUCcucGCGCCGCGgGCc -3'
miRNA:   3'- -GGUGCag----CGACGGc--CGCGGCGUgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.