miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10964 5' -62.7 NC_002794.1 + 180375 0.67 0.622409
Target:  5'- gCGCGaggaCGCUGCCGGCcaGCUGCucgaACGgGa -3'
miRNA:   3'- gGUGCa---GCGACGGCCG--CGGCG----UGCgC- -5'
10964 5' -62.7 NC_002794.1 + 180266 0.66 0.731462
Target:  5'- uCCGCuUCGCcggucuccucgcgGCCcGCGCCGC-CGCa -3'
miRNA:   3'- -GGUGcAGCGa------------CGGcCGCGGCGuGCGc -5'
10964 5' -62.7 NC_002794.1 + 179617 0.66 0.688784
Target:  5'- gCGCGagCGaCUGCCgGGCGCUGCgACGg- -3'
miRNA:   3'- gGUGCa-GC-GACGG-CCGCGGCG-UGCgc -5'
10964 5' -62.7 NC_002794.1 + 157661 0.66 0.698159
Target:  5'- cCCgACG-CGCUGgCGGCuuggGCCGCuugGCGUGc -3'
miRNA:   3'- -GG-UGCaGCGACgGCCG----CGGCG---UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 156381 0.74 0.272225
Target:  5'- aCACGgggucuucuucuagaGCgGCCGGCGCCGCGgcCGCGg -3'
miRNA:   3'- gGUGCag-------------CGaCGGCCGCGGCGU--GCGC- -5'
10964 5' -62.7 NC_002794.1 + 156022 0.69 0.510341
Target:  5'- cUCAUggGUCGCaGCCGucGCGUCGCGCGaCGg -3'
miRNA:   3'- -GGUG--CAGCGaCGGC--CGCGGCGUGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 154434 0.68 0.584473
Target:  5'- aCAgGUCGC-GCCGa-GCCGCACGaCGc -3'
miRNA:   3'- gGUgCAGCGaCGGCcgCGGCGUGC-GC- -5'
10964 5' -62.7 NC_002794.1 + 153848 0.67 0.641438
Target:  5'- gCGCGUUGCcccccgccgUGCCGGCggaauuccuGCCGUucguccACGCGc -3'
miRNA:   3'- gGUGCAGCG---------ACGGCCG---------CGGCG------UGCGC- -5'
10964 5' -62.7 NC_002794.1 + 153660 0.69 0.556313
Target:  5'- gCCGCGUCcgGCcGCCGGUugugagGCuCGaCGCGCGa -3'
miRNA:   3'- -GGUGCAG--CGaCGGCCG------CG-GC-GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 153400 0.78 0.169743
Target:  5'- aUCGCGa-GCUGUCGcgaGCGCCGCGCGCGg -3'
miRNA:   3'- -GGUGCagCGACGGC---CGCGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 152227 0.69 0.547009
Target:  5'- -gACGUCGCgcGCCa-CGUCGCGCGCa -3'
miRNA:   3'- ggUGCAGCGa-CGGccGCGGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 151732 0.7 0.448869
Target:  5'- -gACGUCGUcggccGCCGGuCGCCuCGCGCGc -3'
miRNA:   3'- ggUGCAGCGa----CGGCC-GCGGcGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 151556 0.67 0.635729
Target:  5'- aUCGaGUUGCUGCugacguagcgcccccCGGCGgCGCGCGCc -3'
miRNA:   3'- -GGUgCAGCGACG---------------GCCGCgGCGUGCGc -5'
10964 5' -62.7 NC_002794.1 + 149678 0.71 0.44042
Target:  5'- gCGCGUCGCgcucgacugGCCgcgGGgGCCGcCugGCGg -3'
miRNA:   3'- gGUGCAGCGa--------CGG---CCgCGGC-GugCGC- -5'
10964 5' -62.7 NC_002794.1 + 149374 0.67 0.647145
Target:  5'- uCCGCcgagaauaaaacCGCUGaCCGGCaacgucGCCGCGCGUGu -3'
miRNA:   3'- -GGUGca----------GCGAC-GGCCG------CGGCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 149268 0.66 0.679368
Target:  5'- cCCuCGUCcCcGCCGGCGgCGCG-GCGg -3'
miRNA:   3'- -GGuGCAGcGaCGGCCGCgGCGUgCGC- -5'
10964 5' -62.7 NC_002794.1 + 149235 0.66 0.725969
Target:  5'- gCCGcCGcCGUcGCCGGgGUCGCgGCGCc -3'
miRNA:   3'- -GGU-GCaGCGaCGGCCgCGGCG-UGCGc -5'
10964 5' -62.7 NC_002794.1 + 148176 0.68 0.61005
Target:  5'- -gGgGUCGCgacgGaaggaggggggucuCCGGCGCCGgCGCGCGc -3'
miRNA:   3'- ggUgCAGCGa---C--------------GGCCGCGGC-GUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 147422 0.69 0.53223
Target:  5'- aCGCGUaccCGCUGCUgcuggacggcuacgGGCGCguguaugcucacuaCGCGCGCGa -3'
miRNA:   3'- gGUGCA---GCGACGG--------------CCGCG--------------GCGUGCGC- -5'
10964 5' -62.7 NC_002794.1 + 146972 0.74 0.286264
Target:  5'- aCCGCcuGUCGCgagGUCGGCGCCGCcggccgACGuCGg -3'
miRNA:   3'- -GGUG--CAGCGa--CGGCCGCGGCG------UGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.