Results 41 - 60 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10964 | 5' | -62.7 | NC_002794.1 | + | 181739 | 0.66 | 0.735109 |
Target: 5'- aCACG-CGCgagcgGCCGGCcagcCCGCugACGCc -3' miRNA: 3'- gGUGCaGCGa----CGGCCGc---GGCG--UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 138291 | 0.66 | 0.735109 |
Target: 5'- gCGgGUgGCgGCCuuGGC-CCGCACGCu -3' miRNA: 3'- gGUgCAgCGaCGG--CCGcGGCGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 131032 | 0.66 | 0.735109 |
Target: 5'- -uGCGgCGCgGCCGGCuGCCGC-CGa- -3' miRNA: 3'- ggUGCaGCGaCGGCCG-CGGCGuGCgc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 185220 | 0.66 | 0.735109 |
Target: 5'- gCCGCGgagagUCGC-GCCGacCGCCGCGCaCGa -3' miRNA: 3'- -GGUGC-----AGCGaCGGCc-GCGGCGUGcGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 118678 | 0.66 | 0.735109 |
Target: 5'- cCCGCGgcCGCcGCCGGCGgCaGCGCccaggaGCGc -3' miRNA: 3'- -GGUGCa-GCGaCGGCCGCgG-CGUG------CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 194759 | 0.66 | 0.725969 |
Target: 5'- cCCACGgCGaCUGCuccgagaaCGGCcgGCaCGCGCGCa -3' miRNA: 3'- -GGUGCaGC-GACG--------GCCG--CG-GCGUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 135477 | 0.66 | 0.725969 |
Target: 5'- aCgACGaCGCcGCCGuCGaCGCGCGCGg -3' miRNA: 3'- -GgUGCaGCGaCGGCcGCgGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 115607 | 0.66 | 0.716759 |
Target: 5'- cCCGC-UCGC--CCGGCGCCGgGagGCGg -3' miRNA: 3'- -GGUGcAGCGacGGCCGCGGCgUg-CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 193811 | 0.66 | 0.716759 |
Target: 5'- cCCGC-UCGU--CUGGCGCCG-ACGCGu -3' miRNA: 3'- -GGUGcAGCGacGGCCGCGGCgUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 59902 | 0.66 | 0.716759 |
Target: 5'- gCCGCGUgCGCaGCgacaugGGCGCC-CGCGUGc -3' miRNA: 3'- -GGUGCA-GCGaCGg-----CCGCGGcGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 41859 | 0.66 | 0.716759 |
Target: 5'- cCCAgGcCGCcgggcaggGCCgGGCGCUGcCACGCc -3' miRNA: 3'- -GGUgCaGCGa-------CGG-CCGCGGC-GUGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 190149 | 0.66 | 0.720451 |
Target: 5'- aCGCGUacUGCUGgCGGCGgcucuccucgaacacCCGC-CGCGc -3' miRNA: 3'- gGUGCA--GCGACgGCCGC---------------GGCGuGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 84929 | 0.66 | 0.716759 |
Target: 5'- gCGCGgagCGCUccccacacGCgGaGCGCCcccgGCACGCGg -3' miRNA: 3'- gGUGCa--GCGA--------CGgC-CGCGG----CGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 23689 | 0.66 | 0.725051 |
Target: 5'- aCACG-CGCcGCCGaggccccgaaGCGucccgaaCCGCGCGCGg -3' miRNA: 3'- gGUGCaGCGaCGGC----------CGC-------GGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 191487 | 0.66 | 0.723213 |
Target: 5'- gCCACGggcgaUCGUccgccaccgagaggUGCCaGCGCCGgGCGuCGg -3' miRNA: 3'- -GGUGC-----AGCG--------------ACGGcCGCGGCgUGC-GC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 60042 | 0.66 | 0.725051 |
Target: 5'- gCCGucUCGCUGCucaccuuCGGcCGCCGCACcGUGc -3' miRNA: 3'- -GGUgcAGCGACG-------GCC-GCGGCGUG-CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 36772 | 0.66 | 0.725969 |
Target: 5'- gCCACccaGCUguaGCCGGcCGCCGUguACGCc -3' miRNA: 3'- -GGUGcagCGA---CGGCC-GCGGCG--UGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 130393 | 0.66 | 0.725969 |
Target: 5'- gCCGCcUgGCUGUCGGaCGCCGCGa--- -3' miRNA: 3'- -GGUGcAgCGACGGCC-GCGGCGUgcgc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 90222 | 0.66 | 0.725969 |
Target: 5'- gCCGCGcCGgaGCCccgccuguGGuCcCCGCGCGCGu -3' miRNA: 3'- -GGUGCaGCgaCGG--------CC-GcGGCGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 68827 | 0.66 | 0.725969 |
Target: 5'- aCgGCGaCGCcGCCGGCGCU---CGCGg -3' miRNA: 3'- -GgUGCaGCGaCGGCCGCGGcguGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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