Results 81 - 100 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10964 | 5' | -62.7 | NC_002794.1 | + | 182549 | 0.66 | 0.707487 |
Target: 5'- aCUGCGcCGCgGCCGGCaCCGuCAC-CGg -3' miRNA: 3'- -GGUGCaGCGaCGGCCGcGGC-GUGcGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 48895 | 0.66 | 0.707487 |
Target: 5'- gCCAgCGUUGCcgcaGCuCGGgGCCGCucCGCa -3' miRNA: 3'- -GGU-GCAGCGa---CG-GCCgCGGCGu-GCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 80391 | 0.66 | 0.698159 |
Target: 5'- gCCGCGacuaccuacUCGCcgcgGCCcagguGGCGCCGgGCGgGg -3' miRNA: 3'- -GGUGC---------AGCGa---CGG-----CCGCGGCgUGCgC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 58350 | 0.66 | 0.704694 |
Target: 5'- aCC-UGcCGCUcgGCCuGGCGCCGCccgacuuccaggagGCGCGc -3' miRNA: 3'- -GGuGCaGCGA--CGG-CCGCGGCG--------------UGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 325 | 0.66 | 0.698159 |
Target: 5'- cCCACGcgCGCgccGCCGacaGCC-CGCGCGa -3' miRNA: 3'- -GGUGCa-GCGa--CGGCcg-CGGcGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 184640 | 0.66 | 0.698159 |
Target: 5'- uCgGCGUCGC-GUCGGCGgCGUA-GCa -3' miRNA: 3'- -GgUGCAGCGaCGGCCGCgGCGUgCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 187061 | 0.66 | 0.698159 |
Target: 5'- cCCGCG--GCccGCCaGGUGCCGCAgGCu -3' miRNA: 3'- -GGUGCagCGa-CGG-CCGCGGCGUgCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 186954 | 0.66 | 0.715835 |
Target: 5'- cCCGgGcCGCUgGCCGcCGCCuccagcaGCGCGCGc -3' miRNA: 3'- -GGUgCaGCGA-CGGCcGCGG-------CGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 78412 | 0.66 | 0.707487 |
Target: 5'- gCCGCGacucucCGCUcCCGGCGUcaCGguCGCGg -3' miRNA: 3'- -GGUGCa-----GCGAcGGCCGCG--GCguGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 79030 | 0.66 | 0.716759 |
Target: 5'- gCCGCcUU-CUGCCGGCccgGCCGCuccCGCGc -3' miRNA: 3'- -GGUGcAGcGACGGCCG---CGGCGu--GCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 59902 | 0.66 | 0.716759 |
Target: 5'- gCCGCGUgCGCaGCgacaugGGCGCC-CGCGUGc -3' miRNA: 3'- -GGUGCA-GCGaCGg-----CCGCGGcGUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 193811 | 0.66 | 0.716759 |
Target: 5'- cCCGC-UCGU--CUGGCGCCG-ACGCGu -3' miRNA: 3'- -GGUGcAGCGacGGCCGCGGCgUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 115607 | 0.66 | 0.716759 |
Target: 5'- cCCGC-UCGC--CCGGCGCCGgGagGCGg -3' miRNA: 3'- -GGUGcAGCGacGGCCGCGGCgUg-CGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 81548 | 0.66 | 0.716759 |
Target: 5'- gCugGaCgGCUGCCGcCGCCGC-CGCc -3' miRNA: 3'- gGugCaG-CGACGGCcGCGGCGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 91144 | 0.66 | 0.716759 |
Target: 5'- gCGCGgacggUGCUGCUgGGCGCCGUggAgGCc -3' miRNA: 3'- gGUGCa----GCGACGG-CCGCGGCG--UgCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 100753 | 0.66 | 0.716759 |
Target: 5'- gCGCGucuaUCGCUgGCCGGuCGCgGaguaCACGCGc -3' miRNA: 3'- gGUGC----AGCGA-CGGCC-GCGgC----GUGCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 110265 | 0.66 | 0.716759 |
Target: 5'- gCgGCGUCGCga-CGGCGgCCGC-CGUc -3' miRNA: 3'- -GgUGCAGCGacgGCCGC-GGCGuGCGc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 66961 | 0.66 | 0.716759 |
Target: 5'- gCCGgcgaGUCGCUcGCCGGgGgaGCGuCGCGa -3' miRNA: 3'- -GGUg---CAGCGA-CGGCCgCggCGU-GCGC- -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 103088 | 0.66 | 0.716759 |
Target: 5'- -aGCGUCGCgGCCcGCGC-GCGCGg- -3' miRNA: 3'- ggUGCAGCGaCGGcCGCGgCGUGCgc -5' |
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10964 | 5' | -62.7 | NC_002794.1 | + | 90657 | 0.66 | 0.716759 |
Target: 5'- aCACGcUCGCgccGuuGGgGCCGgcCGCGUGg -3' miRNA: 3'- gGUGC-AGCGa--CggCCgCGGC--GUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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