miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10965 3' -59.9 NC_002794.1 + 131856 0.66 0.862109
Target:  5'- uCGCACCGGAucccgacucuugggcGCCGC-GGccucaucuCGGUCgCg -3'
miRNA:   3'- -GCGUGGCCU---------------UGGCGgCCau------GCCAGgG- -5'
10965 3' -59.9 NC_002794.1 + 55492 0.66 0.859235
Target:  5'- cCGC-CCGGAACa---GGaugACGGUCCUg -3'
miRNA:   3'- -GCGuGGCCUUGgcggCCa--UGCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 99814 0.66 0.859235
Target:  5'- gGCGCCGGcGCCGUCGGccgaccUGCucUUCCa -3'
miRNA:   3'- gCGUGGCCuUGGCGGCC------AUGccAGGG- -5'
10965 3' -59.9 NC_002794.1 + 22169 0.66 0.859235
Target:  5'- aGCACCGGcgcuccacgGACgGCCGGacucACGaaCCCg -3'
miRNA:   3'- gCGUGGCC---------UUGgCGGCCa---UGCcaGGG- -5'
10965 3' -59.9 NC_002794.1 + 111128 0.66 0.859235
Target:  5'- gGCGCCGG--CgGCCGGUGC--UCCa -3'
miRNA:   3'- gCGUGGCCuuGgCGGCCAUGccAGGg -5'
10965 3' -59.9 NC_002794.1 + 116812 0.66 0.859235
Target:  5'- gGCGCCGu-AgCGCgGGUcgcucUGGUCCCg -3'
miRNA:   3'- gCGUGGCcuUgGCGgCCAu----GCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 126134 0.66 0.859235
Target:  5'- uGCGCCGGuuucuGGCCGgcccuCUGGgacGCGGUCUa -3'
miRNA:   3'- gCGUGGCC-----UUGGC-----GGCCa--UGCCAGGg -5'
10965 3' -59.9 NC_002794.1 + 141253 0.66 0.859235
Target:  5'- gGCGCCGGu-CCGUucaacUGG-ACGGggUCCCu -3'
miRNA:   3'- gCGUGGCCuuGGCG-----GCCaUGCC--AGGG- -5'
10965 3' -59.9 NC_002794.1 + 178823 0.66 0.859235
Target:  5'- gGCACuCGGGucucCCGCgGGUcucGCGuGcCCCg -3'
miRNA:   3'- gCGUG-GCCUu---GGCGgCCA---UGC-CaGGG- -5'
10965 3' -59.9 NC_002794.1 + 186986 0.66 0.859235
Target:  5'- gCGCACCaGcuCCGCCGGcUGCGucGUCa- -3'
miRNA:   3'- -GCGUGGcCuuGGCGGCC-AUGC--CAGgg -5'
10965 3' -59.9 NC_002794.1 + 128168 0.66 0.858511
Target:  5'- uCGCGCCGcGGACgGgUCGGUGaccucguCGGUCgCg -3'
miRNA:   3'- -GCGUGGC-CUUGgC-GGCCAU-------GCCAGgG- -5'
10965 3' -59.9 NC_002794.1 + 145920 0.66 0.858511
Target:  5'- cCGCGCCgagcggaGGGGCCGgCGaGaGCGGUUCg -3'
miRNA:   3'- -GCGUGG-------CCUUGGCgGC-CaUGCCAGGg -5'
10965 3' -59.9 NC_002794.1 + 93473 0.66 0.854869
Target:  5'- cCGCACguggccaccuucucgCGGGAgUCGCUGGUGCGcUCCg -3'
miRNA:   3'- -GCGUG---------------GCCUU-GGCGGCCAUGCcAGGg -5'
10965 3' -59.9 NC_002794.1 + 46328 0.66 0.851923
Target:  5'- gGCGCCGucGCCG-CGG-ACGGcUCCa -3'
miRNA:   3'- gCGUGGCcuUGGCgGCCaUGCC-AGGg -5'
10965 3' -59.9 NC_002794.1 + 90321 0.66 0.851923
Target:  5'- gCGCACUGGccgcagcugguGGCCGUCGGccugUGC-GUCCUg -3'
miRNA:   3'- -GCGUGGCC-----------UUGGCGGCC----AUGcCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 66656 0.66 0.851923
Target:  5'- gGCAUCGGuAACgGCgucgUGGUcaACGGcCCCg -3'
miRNA:   3'- gCGUGGCC-UUGgCG----GCCA--UGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 101476 0.66 0.851923
Target:  5'- gCGCGCCcgcccGAAaCGCCGGcggcCGGUCCg -3'
miRNA:   3'- -GCGUGGc----CUUgGCGGCCau--GCCAGGg -5'
10965 3' -59.9 NC_002794.1 + 102086 0.66 0.851923
Target:  5'- gCGgGCCGacGAGCCGCCgcccacGGUGCgGGUCa- -3'
miRNA:   3'- -GCgUGGC--CUUGGCGG------CCAUG-CCAGgg -5'
10965 3' -59.9 NC_002794.1 + 34038 0.66 0.851923
Target:  5'- --aGCCGccuGCUGCCGGgcCGG-CCCg -3'
miRNA:   3'- gcgUGGCcu-UGGCGGCCauGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 134409 0.66 0.851923
Target:  5'- gGCGCCucGAGgCGCCGGcguUGuGUCCCc -3'
miRNA:   3'- gCGUGGc-CUUgGCGGCCau-GC-CAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.