miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10965 3' -59.9 NC_002794.1 + 137650 0.8 0.186662
Target:  5'- gGCGCCGGGccuccggcGCCGCUGGUgcggacgcACGGUCCa -3'
miRNA:   3'- gCGUGGCCU--------UGGCGGCCA--------UGCCAGGg -5'
10965 3' -59.9 NC_002794.1 + 20432 0.79 0.200269
Target:  5'- cCGCGCCGGAggacgugcACCGCUGGagccgccucUGCGGcCCCg -3'
miRNA:   3'- -GCGUGGCCU--------UGGCGGCC---------AUGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 148131 0.78 0.240819
Target:  5'- uCGgGCgCGGGGCCGCCGGggcgaggGCGGUCgCg -3'
miRNA:   3'- -GCgUG-GCCUUGGCGGCCa------UGCCAGgG- -5'
10965 3' -59.9 NC_002794.1 + 41688 0.78 0.251973
Target:  5'- aGCGCCcGGACCGCCGG-AUcGUCCCg -3'
miRNA:   3'- gCGUGGcCUUGGCGGCCaUGcCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 90223 0.77 0.275554
Target:  5'- cCGCGCCGGAGCC-CCGccugUGGUCCCc -3'
miRNA:   3'- -GCGUGGCCUUGGcGGCcau-GCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 80436 0.77 0.281719
Target:  5'- cCGcCGCCGGcGGCCGCCGGcccgucgGCGG-CCCg -3'
miRNA:   3'- -GC-GUGGCC-UUGGCGGCCa------UGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 19527 0.77 0.286729
Target:  5'- aGCGCCGGcgcggcgcggcCCGCCGGUGuCGGaCCCg -3'
miRNA:   3'- gCGUGGCCuu---------GGCGGCCAU-GCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 96184 0.77 0.294375
Target:  5'- uGCACCGGcGCCuGCCGGc-CGaGUCCCu -3'
miRNA:   3'- gCGUGGCCuUGG-CGGCCauGC-CAGGG- -5'
10965 3' -59.9 NC_002794.1 + 49122 0.76 0.300867
Target:  5'- uGCACCGGGACCgGCCGGa--GGUCg- -3'
miRNA:   3'- gCGUGGCCUUGG-CGGCCaugCCAGgg -5'
10965 3' -59.9 NC_002794.1 + 138922 0.76 0.334981
Target:  5'- cCGCGgCGGAugguCUGCCGGUGCGccCCCa -3'
miRNA:   3'- -GCGUgGCCUu---GGCGGCCAUGCcaGGG- -5'
10965 3' -59.9 NC_002794.1 + 141439 0.75 0.349397
Target:  5'- gGCGCCGGGGgCGCCGGgagcggcGCGGcgUCCg -3'
miRNA:   3'- gCGUGGCCUUgGCGGCCa------UGCCa-GGG- -5'
10965 3' -59.9 NC_002794.1 + 151591 0.75 0.356769
Target:  5'- gCGCGCCGccGCCGCgGGcccGCGGUUCCu -3'
miRNA:   3'- -GCGUGGCcuUGGCGgCCa--UGCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 2610 0.75 0.356769
Target:  5'- gGCACCuacccGGCCGCCGGcGCGcGUCCCc -3'
miRNA:   3'- gCGUGGcc---UUGGCGGCCaUGC-CAGGG- -5'
10965 3' -59.9 NC_002794.1 + 179092 0.75 0.36425
Target:  5'- cCGC-CCgaGGAACCGuCCGGUcguccGCGGUCCg -3'
miRNA:   3'- -GCGuGG--CCUUGGC-GGCCA-----UGCCAGGg -5'
10965 3' -59.9 NC_002794.1 + 121405 0.74 0.403251
Target:  5'- gGCGCCGGGACCgcgaccgucGCCGGgaccGCGGcCaCCa -3'
miRNA:   3'- gCGUGGCCUUGG---------CGGCCa---UGCCaG-GG- -5'
10965 3' -59.9 NC_002794.1 + 34085 0.74 0.411363
Target:  5'- gGCgGCCGGGcaGCCGUCGG-GCGG-CCCg -3'
miRNA:   3'- gCG-UGGCCU--UGGCGGCCaUGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 104435 0.74 0.411363
Target:  5'- gGC-CCGGAcGCCGCCGcGgGCGG-CCCg -3'
miRNA:   3'- gCGuGGCCU-UGGCGGC-CaUGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 58011 0.74 0.419575
Target:  5'- uCGcCGCCGGGGCCGCCGccgGCGaaCCCg -3'
miRNA:   3'- -GC-GUGGCCUUGGCGGCca-UGCcaGGG- -5'
10965 3' -59.9 NC_002794.1 + 34839 0.74 0.427885
Target:  5'- gGCGCCGGAGCgggCGUCGGaGCGGgcgCCg -3'
miRNA:   3'- gCGUGGCCUUG---GCGGCCaUGCCa--GGg -5'
10965 3' -59.9 NC_002794.1 + 148768 0.74 0.427885
Target:  5'- uCGCGCUGGaGugCGCCuGGUAccCGGUCCg -3'
miRNA:   3'- -GCGUGGCC-UugGCGG-CCAU--GCCAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.