miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10965 3' -59.9 NC_002794.1 + 34038 0.66 0.851923
Target:  5'- --aGCCGccuGCUGCCGGgcCGG-CCCg -3'
miRNA:   3'- gcgUGGCcu-UGGCGGCCauGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 135997 0.66 0.851923
Target:  5'- uCGCuguCCGGGuccaguCCGCUGGUcacucGCGuGcCCCg -3'
miRNA:   3'- -GCGu--GGCCUu-----GGCGGCCA-----UGC-CaGGG- -5'
10965 3' -59.9 NC_002794.1 + 183102 0.66 0.851182
Target:  5'- aCGUuCCGGAucCCGCacguguuCGGcgGCGGcUCCCg -3'
miRNA:   3'- -GCGuGGCCUu-GGCG-------GCCa-UGCC-AGGG- -5'
10965 3' -59.9 NC_002794.1 + 66548 0.66 0.849695
Target:  5'- gGCGCCGGcGgauaguaauacgguAUCGCCGGcgccgGCGGcagCCCc -3'
miRNA:   3'- gCGUGGCC-U--------------UGGCGGCCa----UGCCa--GGG- -5'
10965 3' -59.9 NC_002794.1 + 68280 0.66 0.844436
Target:  5'- aGCACCGG-GCCaGCCGGgcgUACGaacgCCUc -3'
miRNA:   3'- gCGUGGCCuUGG-CGGCC---AUGCca--GGG- -5'
10965 3' -59.9 NC_002794.1 + 107513 0.66 0.844436
Target:  5'- gGUGCCGGucgacgccGACgGCCGGcGCGGcgCCg -3'
miRNA:   3'- gCGUGGCC--------UUGgCGGCCaUGCCa-GGg -5'
10965 3' -59.9 NC_002794.1 + 141676 0.66 0.844436
Target:  5'- aGCGaaGacGggUCGCCGuacGCGGUCCCg -3'
miRNA:   3'- gCGUggC--CuuGGCGGCca-UGCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 135514 0.66 0.844436
Target:  5'- cCGCacACCGGAcgcucGCgCGCCGcu-CGGUCgCCg -3'
miRNA:   3'- -GCG--UGGCCU-----UG-GCGGCcauGCCAG-GG- -5'
10965 3' -59.9 NC_002794.1 + 42660 0.66 0.844436
Target:  5'- aGCcgaCGGcGCCGCCGGcACGGgguacgCCg -3'
miRNA:   3'- gCGug-GCCuUGGCGGCCaUGCCa-----GGg -5'
10965 3' -59.9 NC_002794.1 + 194357 0.66 0.844436
Target:  5'- gGCGCCaGGAACCGCUcccGCGuG-CCCa -3'
miRNA:   3'- gCGUGG-CCUUGGCGGccaUGC-CaGGG- -5'
10965 3' -59.9 NC_002794.1 + 49013 0.66 0.844436
Target:  5'- cCGCGCCGcGGcgGCCGCggcgucgucCGGcGCGGUCg- -3'
miRNA:   3'- -GCGUGGC-CU--UGGCG---------GCCaUGCCAGgg -5'
10965 3' -59.9 NC_002794.1 + 192679 0.66 0.844436
Target:  5'- aGCGCCGG--CCGCCGucGUACGucuucagcagCCCg -3'
miRNA:   3'- gCGUGGCCuuGGCGGC--CAUGCca--------GGG- -5'
10965 3' -59.9 NC_002794.1 + 147068 0.66 0.844436
Target:  5'- ----aCGGAGCCGCgGGcgccCGGUCCa -3'
miRNA:   3'- gcgugGCCUUGGCGgCCau--GCCAGGg -5'
10965 3' -59.9 NC_002794.1 + 52735 0.66 0.844436
Target:  5'- cCGCACCcccaGGAACCGUUcGUaguaccgcgccGCGG-CCCg -3'
miRNA:   3'- -GCGUGG----CCUUGGCGGcCA-----------UGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 124417 0.66 0.836778
Target:  5'- gGCGCCGu--CCGCC---GCGGUCUCu -3'
miRNA:   3'- gCGUGGCcuuGGCGGccaUGCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 131532 0.66 0.836778
Target:  5'- gGCGCCGGGcccgucaucacgGCCucgcccgugGUCGGcGCGGcgCCCg -3'
miRNA:   3'- gCGUGGCCU------------UGG---------CGGCCaUGCCa-GGG- -5'
10965 3' -59.9 NC_002794.1 + 146915 0.66 0.836778
Target:  5'- gGCGCgGGGAUCgGCCGG-ACGGagagcgCUCg -3'
miRNA:   3'- gCGUGgCCUUGG-CGGCCaUGCCa-----GGG- -5'
10965 3' -59.9 NC_002794.1 + 121244 0.66 0.836778
Target:  5'- cCGCuGCCGccGCCGCCGccGCGGcCUCg -3'
miRNA:   3'- -GCG-UGGCcuUGGCGGCcaUGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 113226 0.66 0.836778
Target:  5'- cCGC-CCGGGcgACCGCCGuccaGGaucUCCCg -3'
miRNA:   3'- -GCGuGGCCU--UGGCGGCcaugCC---AGGG- -5'
10965 3' -59.9 NC_002794.1 + 178632 0.66 0.836778
Target:  5'- uCGguUCGGAguACCGgcuuuCUGGUcgGCGGUCCUc -3'
miRNA:   3'- -GCguGGCCU--UGGC-----GGCCA--UGCCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.