miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10965 3' -59.9 NC_002794.1 + 138 0.67 0.812841
Target:  5'- aGC-CCGGGACCGCCGcaGgGGcgCaCCa -3'
miRNA:   3'- gCGuGGCCUUGGCGGCcaUgCCa-G-GG- -5'
10965 3' -59.9 NC_002794.1 + 2610 0.75 0.356769
Target:  5'- gGCACCuacccGGCCGCCGGcGCGcGUCCCc -3'
miRNA:   3'- gCGUGGcc---UUGGCGGCCaUGC-CAGGG- -5'
10965 3' -59.9 NC_002794.1 + 3497 0.72 0.525102
Target:  5'- cCGCGCCcggucaaagaGGAACCggugGCCGaGUGagGGUCCCa -3'
miRNA:   3'- -GCGUGG----------CCUUGG----CGGC-CAUg-CCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 6335 0.66 0.828955
Target:  5'- gGC-CCGGGAUaacacccaggaGaCCGGUcacauggugucGCGGUCCCu -3'
miRNA:   3'- gCGuGGCCUUGg----------C-GGCCA-----------UGCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 10666 0.67 0.804564
Target:  5'- aGCGuCUGGAGCCGCCugagcuucGUG-GGUCUCa -3'
miRNA:   3'- gCGU-GGCCUUGGCGGc-------CAUgCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 12409 0.67 0.804564
Target:  5'- cCGCACgCGGAcggcgcgcGCCGaCUGGcaGCuGUCCCg -3'
miRNA:   3'- -GCGUG-GCCU--------UGGC-GGCCa-UGcCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 14604 0.7 0.62954
Target:  5'- gCGCGCCGGGcACCgcgacgggGCCGGagACGGggCCg -3'
miRNA:   3'- -GCGUGGCCU-UGG--------CGGCCa-UGCCagGG- -5'
10965 3' -59.9 NC_002794.1 + 14649 0.7 0.62954
Target:  5'- aGaCGCCGGcGCCGCgGcGU-CGGUCCg -3'
miRNA:   3'- gC-GUGGCCuUGGCGgC-CAuGCCAGGg -5'
10965 3' -59.9 NC_002794.1 + 15113 0.66 0.836778
Target:  5'- aCGCGCCGGAgaccgACCGCCGuGUucuACGuGaauucgCUCg -3'
miRNA:   3'- -GCGUGGCCU-----UGGCGGC-CA---UGC-Ca-----GGG- -5'
10965 3' -59.9 NC_002794.1 + 17271 0.66 0.851923
Target:  5'- uCGuCAcCCGGGcacGCCGCCGccgACGGUCa- -3'
miRNA:   3'- -GC-GU-GGCCU---UGGCGGCca-UGCCAGgg -5'
10965 3' -59.9 NC_002794.1 + 17579 0.73 0.479694
Target:  5'- cCGCACCGGAcccgacgccACCGaCGccuCGGUCCCc -3'
miRNA:   3'- -GCGUGGCCU---------UGGCgGCcauGCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 18280 0.67 0.770142
Target:  5'- gGCGCCGagccuucgaaccGAGCCGCCcucucgagGGcccucUACGGUCUCu -3'
miRNA:   3'- gCGUGGC------------CUUGGCGG--------CC-----AUGCCAGGG- -5'
10965 3' -59.9 NC_002794.1 + 19471 0.68 0.724728
Target:  5'- gGCGgCGGGAcCCGCCGGU-CG--CCCg -3'
miRNA:   3'- gCGUgGCCUU-GGCGGCCAuGCcaGGG- -5'
10965 3' -59.9 NC_002794.1 + 19527 0.77 0.286729
Target:  5'- aGCGCCGGcgcggcgcggcCCGCCGGUGuCGGaCCCg -3'
miRNA:   3'- gCGUGGCCuu---------GGCGGCCAU-GCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 19817 0.68 0.715402
Target:  5'- gCGCGCCGGAcuggaucaagcuGCUGCaCGGcUACGGggaCUg -3'
miRNA:   3'- -GCGUGGCCU------------UGGCG-GCC-AUGCCag-GG- -5'
10965 3' -59.9 NC_002794.1 + 20375 0.67 0.7876
Target:  5'- uGCGCCGG-AUCGUcgacgCGGUGCGGcgggaCCg -3'
miRNA:   3'- gCGUGGCCuUGGCG-----GCCAUGCCag---GG- -5'
10965 3' -59.9 NC_002794.1 + 20432 0.79 0.200269
Target:  5'- cCGCGCCGGAggacgugcACCGCUGGagccgccucUGCGGcCCCg -3'
miRNA:   3'- -GCGUGGCCU--------UGGCGGCC---------AUGCCaGGG- -5'
10965 3' -59.9 NC_002794.1 + 22169 0.66 0.859235
Target:  5'- aGCACCGGcgcuccacgGACgGCCGGacucACGaaCCCg -3'
miRNA:   3'- gCGUGGCC---------UUGgCGGCCa---UGCcaGGG- -5'
10965 3' -59.9 NC_002794.1 + 22720 0.69 0.667984
Target:  5'- gGCGCCGaGAGCCGgcgaaCGGU-CGGUCa- -3'
miRNA:   3'- gCGUGGC-CUUGGCg----GCCAuGCCAGgg -5'
10965 3' -59.9 NC_002794.1 + 24011 0.67 0.803728
Target:  5'- gGcCGCCGucACCGCggcgccuCGGcgacgGCGGUCCCu -3'
miRNA:   3'- gC-GUGGCcuUGGCG-------GCCa----UGCCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.