miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10965 5' -51.7 NC_002794.1 + 138585 0.66 0.992824
Target:  5'- uCGAGGCGCgUCgGcGCGGCggaGAGCGg -3'
miRNA:   3'- -GCUUCGUGgAGgC-CGUUGaa-CUUGUu -5'
10965 5' -51.7 NC_002794.1 + 112334 0.66 0.991753
Target:  5'- gGAGcGCGCCggCCGGCGGCgccggcggcgGGGCGGg -3'
miRNA:   3'- gCUU-CGUGGa-GGCCGUUGaa--------CUUGUU- -5'
10965 5' -51.7 NC_002794.1 + 128452 0.66 0.990559
Target:  5'- --cGGCGCCUCCGG-AGCccaGGACGAc -3'
miRNA:   3'- gcuUCGUGGAGGCCgUUGaa-CUUGUU- -5'
10965 5' -51.7 NC_002794.1 + 57722 0.66 0.990559
Target:  5'- -cGAGCACCUgCGGCGcgucuACaaGAACAc -3'
miRNA:   3'- gcUUCGUGGAgGCCGU-----UGaaCUUGUu -5'
10965 5' -51.7 NC_002794.1 + 177673 0.66 0.990559
Target:  5'- gCGAGGCcucCCUaCCGGCAACgaaaccGAAUAc -3'
miRNA:   3'- -GCUUCGu--GGA-GGCCGUUGaa----CUUGUu -5'
10965 5' -51.7 NC_002794.1 + 110643 0.66 0.989233
Target:  5'- gCGggGUcggguuUCUCCGGCGGCUgcaGACAGu -3'
miRNA:   3'- -GCuuCGu-----GGAGGCCGUUGAac-UUGUU- -5'
10965 5' -51.7 NC_002794.1 + 103403 0.66 0.989233
Target:  5'- aGggGCACCacgUCgGGCAGCgccgcgUGcACGAu -3'
miRNA:   3'- gCuuCGUGG---AGgCCGUUGa-----ACuUGUU- -5'
10965 5' -51.7 NC_002794.1 + 145534 0.66 0.989233
Target:  5'- -cGAGCGCCUCgGGCGcCccGAGCGg -3'
miRNA:   3'- gcUUCGUGGAGgCCGUuGaaCUUGUu -5'
10965 5' -51.7 NC_002794.1 + 90925 0.67 0.982431
Target:  5'- aCGGAGgACCa-CGGCGACgUGGGCGGg -3'
miRNA:   3'- -GCUUCgUGGagGCCGUUGaACUUGUU- -5'
10965 5' -51.7 NC_002794.1 + 84949 0.67 0.982431
Target:  5'- gCGGAGCGCCcCCGGCAcgcggaucCUUGGccccggccGCGAa -3'
miRNA:   3'- -GCUUCGUGGaGGCCGUu-------GAACU--------UGUU- -5'
10965 5' -51.7 NC_002794.1 + 142162 0.67 0.982431
Target:  5'- gCGGuAGCACCggcagcgUCGGCAGCgcgagGAGCGg -3'
miRNA:   3'- -GCU-UCGUGGa------GGCCGUUGaa---CUUGUu -5'
10965 5' -51.7 NC_002794.1 + 142906 0.67 0.978007
Target:  5'- --cGGCGuCCUCCGGgGGCcgGAGCAGg -3'
miRNA:   3'- gcuUCGU-GGAGGCCgUUGaaCUUGUU- -5'
10965 5' -51.7 NC_002794.1 + 10489 0.68 0.97281
Target:  5'- cCGAAGCGCagucuggCCGGgGGCUccGAGCGAa -3'
miRNA:   3'- -GCUUCGUGga-----GGCCgUUGAa-CUUGUU- -5'
10965 5' -51.7 NC_002794.1 + 113082 0.68 0.963434
Target:  5'- uGGAGCGCCUCggcgaacggcggCGGCAGCUccuGCAc -3'
miRNA:   3'- gCUUCGUGGAG------------GCCGUUGAacuUGUu -5'
10965 5' -51.7 NC_002794.1 + 107067 0.69 0.95986
Target:  5'- gCGcGGCGCCgCCGGCAugUcgGAGCc- -3'
miRNA:   3'- -GCuUCGUGGaGGCCGUugAa-CUUGuu -5'
10965 5' -51.7 NC_002794.1 + 137694 0.69 0.943184
Target:  5'- uGAGGCggaagGCCUCCGGCuugagccggcAACUUGgAGCGu -3'
miRNA:   3'- gCUUCG-----UGGAGGCCG----------UUGAAC-UUGUu -5'
10965 5' -51.7 NC_002794.1 + 188807 0.7 0.916753
Target:  5'- -cGAGCGCCgUCCaGGCGcACUUGAGCu- -3'
miRNA:   3'- gcUUCGUGG-AGG-CCGU-UGAACUUGuu -5'
10965 5' -51.7 NC_002794.1 + 119785 0.71 0.876819
Target:  5'- -cAGGCGgCUCCGGUccgccGACUUGAGCGu -3'
miRNA:   3'- gcUUCGUgGAGGCCG-----UUGAACUUGUu -5'
10965 5' -51.7 NC_002794.1 + 69737 0.72 0.869331
Target:  5'- cCGGAGCGCCacggCCGGCGACgccgcggGGAUg- -3'
miRNA:   3'- -GCUUCGUGGa---GGCCGUUGaa-----CUUGuu -5'
10965 5' -51.7 NC_002794.1 + 29805 0.73 0.828646
Target:  5'- -cAAGCACCUCCGaaGCGAUcugUGAGCAGg -3'
miRNA:   3'- gcUUCGUGGAGGC--CGUUGa--ACUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.