miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 145693 0.66 0.961548
Target:  5'- aGGUCGAgcucgaccuGAGG-CCGAAAACGgGGaUCGg -3'
miRNA:   3'- -CCGGCU---------CUCCgGGUUUUUGCgCC-AGU- -5'
10968 5' -55.4 NC_002794.1 + 101698 0.66 0.961548
Target:  5'- -cCCGAGccGGcGCCCGAGGACGUGuUCGu -3'
miRNA:   3'- ccGGCUC--UC-CGGGUUUUUGCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 143755 0.66 0.961548
Target:  5'- cGCCGGGGGGCuCCGcucguCGuCGGUg- -3'
miRNA:   3'- cCGGCUCUCCG-GGUuuuu-GC-GCCAgu -5'
10968 5' -55.4 NC_002794.1 + 84770 0.66 0.961548
Target:  5'- gGGCCGuccGAGGCCCG---GCcCGGcUCu -3'
miRNA:   3'- -CCGGCu--CUCCGGGUuuuUGcGCC-AGu -5'
10968 5' -55.4 NC_002794.1 + 30842 0.66 0.961548
Target:  5'- uGGUCGgcGGAGGCUUcgcguaccagguGAAGAaGCGGUCGg -3'
miRNA:   3'- -CCGGC--UCUCCGGG------------UUUUUgCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 37551 0.66 0.961204
Target:  5'- cGCCgGAGGGGCCaCGAccgcgucuccGAGCcgucgaacagauaGCGGUCGc -3'
miRNA:   3'- cCGG-CUCUCCGG-GUU----------UUUG-------------CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 126604 0.66 0.95801
Target:  5'- cGCCGAGGccGGCgCCGAcguCGCGG-CGu -3'
miRNA:   3'- cCGGCUCU--CCG-GGUUuuuGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 71255 0.66 0.95801
Target:  5'- cGGCaCGuagaacuuGAGGUCC----GCGCGGUCc -3'
miRNA:   3'- -CCG-GCu-------CUCCGGGuuuuUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 54244 0.66 0.95801
Target:  5'- cGGCCGAGcgcgcGGUCCAc-GGCGcCGcGUCGg -3'
miRNA:   3'- -CCGGCUCu----CCGGGUuuUUGC-GC-CAGU- -5'
10968 5' -55.4 NC_002794.1 + 47783 0.66 0.954254
Target:  5'- aGGUCGAGcGGCCgCAGu-ACaCGGUCu -3'
miRNA:   3'- -CCGGCUCuCCGG-GUUuuUGcGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 44511 0.66 0.954254
Target:  5'- cGGCCcAGAccgGGCCCGuguccgcGAGCGCGccGUCGu -3'
miRNA:   3'- -CCGGcUCU---CCGGGUu------UUUGCGC--CAGU- -5'
10968 5' -55.4 NC_002794.1 + 89913 0.66 0.954254
Target:  5'- cGGCCcguuGGCgCUAGAGGCGCGGg-- -3'
miRNA:   3'- -CCGGcucuCCG-GGUUUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 102751 0.66 0.954254
Target:  5'- uGGCCGAG-GaCCCGGAcuACGUGGcCGc -3'
miRNA:   3'- -CCGGCUCuCcGGGUUUu-UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 189119 0.66 0.954254
Target:  5'- gGGCCaGGuGGUCCAAGuGCGgGGcCGc -3'
miRNA:   3'- -CCGGcUCuCCGGGUUUuUGCgCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 129997 0.66 0.954254
Target:  5'- cGUCGAacGGCCCcGGAGCGUgcgGGUCGg -3'
miRNA:   3'- cCGGCUcuCCGGGuUUUUGCG---CCAGU- -5'
10968 5' -55.4 NC_002794.1 + 102299 0.66 0.950278
Target:  5'- cGGCCGGGucuucGGCUCc--GACGCGcucGUCAu -3'
miRNA:   3'- -CCGGCUCu----CCGGGuuuUUGCGC---CAGU- -5'
10968 5' -55.4 NC_002794.1 + 101591 0.66 0.950278
Target:  5'- cGGCCGGGGgggcgggugccGGCCCGccGGGCGgGGg-- -3'
miRNA:   3'- -CCGGCUCU-----------CCGGGUu-UUUGCgCCagu -5'
10968 5' -55.4 NC_002794.1 + 100476 0.66 0.950278
Target:  5'- uGGCgGAGAa-CCUGGAcGACGUGGUCAu -3'
miRNA:   3'- -CCGgCUCUccGGGUUU-UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 34704 0.66 0.950278
Target:  5'- cGCC-AGcAGGCCCGccggcgccacGAGGCGCGGg-- -3'
miRNA:   3'- cCGGcUC-UCCGGGU----------UUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 16384 0.66 0.950278
Target:  5'- cGGCCG---GGUCCGAAcccaaGCGGUCGu -3'
miRNA:   3'- -CCGGCucuCCGGGUUUuug--CGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.