Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10968 | 5' | -55.4 | NC_002794.1 | + | 184482 | 0.66 | 0.946078 |
Target: 5'- cGGCgCGcGGGGCCCcGGAcgcccgggcgGCGCGGg-- -3' miRNA: 3'- -CCG-GCuCUCCGGGuUUU----------UGCGCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 89913 | 0.66 | 0.954254 |
Target: 5'- cGGCCcguuGGCgCUAGAGGCGCGGg-- -3' miRNA: 3'- -CCGGcucuCCG-GGUUUUUGCGCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 44511 | 0.66 | 0.954254 |
Target: 5'- cGGCCcAGAccgGGCCCGuguccgcGAGCGCGccGUCGu -3' miRNA: 3'- -CCGGcUCU---CCGGGUu------UUUGCGC--CAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 47783 | 0.66 | 0.954254 |
Target: 5'- aGGUCGAGcGGCCgCAGu-ACaCGGUCu -3' miRNA: 3'- -CCGGCUCuCCGG-GUUuuUGcGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 102299 | 0.66 | 0.950278 |
Target: 5'- cGGCCGGGucuucGGCUCc--GACGCGcucGUCAu -3' miRNA: 3'- -CCGGCUCu----CCGGGuuuUUGCGC---CAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 101591 | 0.66 | 0.950278 |
Target: 5'- cGGCCGGGGgggcgggugccGGCCCGccGGGCGgGGg-- -3' miRNA: 3'- -CCGGCUCU-----------CCGGGUu-UUUGCgCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 100476 | 0.66 | 0.950278 |
Target: 5'- uGGCgGAGAa-CCUGGAcGACGUGGUCAu -3' miRNA: 3'- -CCGgCUCUccGGGUUU-UUGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 34704 | 0.66 | 0.950278 |
Target: 5'- cGCC-AGcAGGCCCGccggcgccacGAGGCGCGGg-- -3' miRNA: 3'- cCGGcUC-UCCGGGU----------UUUUGCGCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 16384 | 0.66 | 0.950278 |
Target: 5'- cGGCCG---GGUCCGAAcccaaGCGGUCGu -3' miRNA: 3'- -CCGGCucuCCGGGUUUuug--CGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 102751 | 0.66 | 0.954254 |
Target: 5'- uGGCCGAG-GaCCCGGAcuACGUGGcCGc -3' miRNA: 3'- -CCGGCUCuCcGGGUUUu-UGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 189119 | 0.66 | 0.954254 |
Target: 5'- gGGCCaGGuGGUCCAAGuGCGgGGcCGc -3' miRNA: 3'- -CCGGcUCuCCGGGUUUuUGCgCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 129997 | 0.66 | 0.954254 |
Target: 5'- cGUCGAacGGCCCcGGAGCGUgcgGGUCGg -3' miRNA: 3'- cCGGCUcuCCGGGuUUUUGCG---CCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 101698 | 0.66 | 0.961548 |
Target: 5'- -cCCGAGccGGcGCCCGAGGACGUGuUCGu -3' miRNA: 3'- ccGGCUC--UC-CGGGUUUUUGCGCcAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 143755 | 0.66 | 0.961548 |
Target: 5'- cGCCGGGGGGCuCCGcucguCGuCGGUg- -3' miRNA: 3'- cCGGCUCUCCG-GGUuuuu-GC-GCCAgu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 84770 | 0.66 | 0.961548 |
Target: 5'- gGGCCGuccGAGGCCCG---GCcCGGcUCu -3' miRNA: 3'- -CCGGCu--CUCCGGGUuuuUGcGCC-AGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 30842 | 0.66 | 0.961548 |
Target: 5'- uGGUCGgcGGAGGCUUcgcguaccagguGAAGAaGCGGUCGg -3' miRNA: 3'- -CCGGC--UCUCCGGG------------UUUUUgCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 126604 | 0.66 | 0.95801 |
Target: 5'- cGCCGAGGccGGCgCCGAcguCGCGG-CGu -3' miRNA: 3'- cCGGCUCU--CCG-GGUUuuuGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 37551 | 0.66 | 0.961204 |
Target: 5'- cGCCgGAGGGGCCaCGAccgcgucuccGAGCcgucgaacagauaGCGGUCGc -3' miRNA: 3'- cCGG-CUCUCCGG-GUU----------UUUG-------------CGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 71255 | 0.66 | 0.95801 |
Target: 5'- cGGCaCGuagaacuuGAGGUCC----GCGCGGUCc -3' miRNA: 3'- -CCG-GCu-------CUCCGGGuuuuUGCGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 54244 | 0.66 | 0.95801 |
Target: 5'- cGGCCGAGcgcgcGGUCCAc-GGCGcCGcGUCGg -3' miRNA: 3'- -CCGGCUCu----CCGGGUuuUUGC-GC-CAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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