miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 126604 0.66 0.95801
Target:  5'- cGCCGAGGccGGCgCCGAcguCGCGG-CGu -3'
miRNA:   3'- cCGGCUCU--CCG-GGUUuuuGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 37551 0.66 0.961204
Target:  5'- cGCCgGAGGGGCCaCGAccgcgucuccGAGCcgucgaacagauaGCGGUCGc -3'
miRNA:   3'- cCGG-CUCUCCGG-GUU----------UUUG-------------CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 102751 0.66 0.954254
Target:  5'- uGGCCGAG-GaCCCGGAcuACGUGGcCGc -3'
miRNA:   3'- -CCGGCUCuCcGGGUUUu-UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 189119 0.66 0.954254
Target:  5'- gGGCCaGGuGGUCCAAGuGCGgGGcCGc -3'
miRNA:   3'- -CCGGcUCuCCGGGUUUuUGCgCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 129997 0.66 0.954254
Target:  5'- cGUCGAacGGCCCcGGAGCGUgcgGGUCGg -3'
miRNA:   3'- cCGGCUcuCCGGGuUUUUGCG---CCAGU- -5'
10968 5' -55.4 NC_002794.1 + 54244 0.66 0.95801
Target:  5'- cGGCCGAGcgcgcGGUCCAc-GGCGcCGcGUCGg -3'
miRNA:   3'- -CCGGCUCu----CCGGGUuuUUGC-GC-CAGU- -5'
10968 5' -55.4 NC_002794.1 + 71255 0.66 0.95801
Target:  5'- cGGCaCGuagaacuuGAGGUCC----GCGCGGUCc -3'
miRNA:   3'- -CCG-GCu-------CUCCGGGuuuuUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 110727 0.67 0.926991
Target:  5'- aGGUCGGGGGGUCUcuccAGAUGCuGUCGg -3'
miRNA:   3'- -CCGGCUCUCCGGGuu--UUUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 23694 0.67 0.92541
Target:  5'- cGCCGccGAGGCCCcGAAgcgucccgaaccgcGCGCGG-CGg -3'
miRNA:   3'- cCGGCu-CUCCGGGuUUU--------------UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 55396 0.67 0.926991
Target:  5'- cGGCCGAGGcGGCC----GAgGCGGcCGa -3'
miRNA:   3'- -CCGGCUCU-CCGGguuuUUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 51473 0.67 0.932109
Target:  5'- uGGUCGAcGAGGCCCAuuucaucaagaAAGACGCcuUUAa -3'
miRNA:   3'- -CCGGCU-CUCCGGGU-----------UUUUGCGccAGU- -5'
10968 5' -55.4 NC_002794.1 + 35647 0.67 0.932109
Target:  5'- -cCCGGGAcggGcGCCCGGucuccGACGUGGUCAa -3'
miRNA:   3'- ccGGCUCU---C-CGGGUUu----UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 109956 0.67 0.926991
Target:  5'- gGGCCGGGGGGUCCAGcc-CGCu---- -3'
miRNA:   3'- -CCGGCUCUCCGGGUUuuuGCGccagu -5'
10968 5' -55.4 NC_002794.1 + 145928 0.67 0.936995
Target:  5'- aGCgGAGGGGCCgGcGAGaGCGGUUc -3'
miRNA:   3'- cCGgCUCUCCGGgUuUUUgCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 44350 0.67 0.936995
Target:  5'- cGCCGGcGAGa-CCGAGAGCGCGG-CGg -3'
miRNA:   3'- cCGGCU-CUCcgGGUUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 95827 0.67 0.936995
Target:  5'- cGGCCGGGGGaGCggcggcggcggCCGGGGAgGCGG-CGg -3'
miRNA:   3'- -CCGGCUCUC-CG-----------GGUUUUUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 78223 0.67 0.936995
Target:  5'- gGGCCGAGAGGCUCucucuAGCcagaCGGcUCc -3'
miRNA:   3'- -CCGGCUCUCCGGGuuu--UUGc---GCC-AGu -5'
10968 5' -55.4 NC_002794.1 + 67955 0.67 0.936995
Target:  5'- -aCCGAGgacggcGGGCCCAGAcGgGuCGGUCGc -3'
miRNA:   3'- ccGGCUC------UCCGGGUUUuUgC-GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 112164 0.67 0.936995
Target:  5'- -cCCGAcGAGGCUCu---GCGCGGcCAg -3'
miRNA:   3'- ccGGCU-CUCCGGGuuuuUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 103573 0.67 0.921641
Target:  5'- cGCCGu--GGCCgAcGAGCaGCGGUCGg -3'
miRNA:   3'- cCGGCucuCCGGgUuUUUG-CGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.