Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10968 | 5' | -55.4 | NC_002794.1 | + | 120063 | 0.72 | 0.703435 |
Target: 5'- cGGCCGcGGAGGCC----GACGCGG-CGg -3' miRNA: 3'- -CCGGC-UCUCCGGguuuUUGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 23892 | 0.72 | 0.731789 |
Target: 5'- cGCCGAG-GGCCCGGGAgccgagugcagcaGCGUGGgCGa -3' miRNA: 3'- cCGGCUCuCCGGGUUUU-------------UGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 51269 | 0.72 | 0.713278 |
Target: 5'- gGGCCGGGAGGCa----GGCGCGGcCc -3' miRNA: 3'- -CCGGCUCUCCGgguuuUUGCGCCaGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 187847 | 0.72 | 0.713278 |
Target: 5'- cGCCGAGGGcucuGCCCAGccgcGCGCGGcUCGc -3' miRNA: 3'- cCGGCUCUC----CGGGUUuu--UGCGCC-AGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 178250 | 0.71 | 0.759438 |
Target: 5'- aGGCCGucGAGGgaagcgggcugaCCGGAGACGgGGUCGg -3' miRNA: 3'- -CCGGCu-CUCCg-----------GGUUUUUGCgCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 192961 | 0.71 | 0.770623 |
Target: 5'- aGGCCGAcGAGccGUgCAGGAccaggGCGCGGUCGc -3' miRNA: 3'- -CCGGCU-CUC--CGgGUUUU-----UGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 185368 | 0.71 | 0.770623 |
Target: 5'- gGGCCGAacgccgcgagcGAGGCCagccagaagaCGAGGGCGCGGg-- -3' miRNA: 3'- -CCGGCU-----------CUCCGG----------GUUUUUGCGCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 43666 | 0.71 | 0.742371 |
Target: 5'- aGCCGGGcucucGGGCCCG--GGCGCGGa-- -3' miRNA: 3'- cCGGCUC-----UCCGGGUuuUUGCGCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 146002 | 0.71 | 0.770623 |
Target: 5'- cGGCCGccGGGgCCGGAGACGCcGUCc -3' miRNA: 3'- -CCGGCucUCCgGGUUUUUGCGcCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 138750 | 0.71 | 0.742371 |
Target: 5'- cGGCCcuccGGGGGCCgAGucGCGgCGGUCGg -3' miRNA: 3'- -CCGGc---UCUCCGGgUUuuUGC-GCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 147578 | 0.71 | 0.779812 |
Target: 5'- aGGCCGAGcGGCacaCCGAGGcgcuCGCGGUg- -3' miRNA: 3'- -CCGGCUCuCCG---GGUUUUu---GCGCCAgu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 147221 | 0.71 | 0.778899 |
Target: 5'- gGGCCGGGgcguuggcgcgauGGGCCCGAGAGCacucCGGgCAg -3' miRNA: 3'- -CCGGCUC-------------UCCGGGUUUUUGc---GCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 141441 | 0.71 | 0.742371 |
Target: 5'- cGCCGGGGGcGCCgGGAGcgGCGCGG-CGu -3' miRNA: 3'- cCGGCUCUC-CGGgUUUU--UGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 128077 | 0.7 | 0.806577 |
Target: 5'- gGGCCGAauGGCCCGAGucGGCGaCGGg-- -3' miRNA: 3'- -CCGGCUcuCCGGGUUU--UUGC-GCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 149657 | 0.7 | 0.815203 |
Target: 5'- cGCCGAgGAGGCCgagCGGGGGCGC-GUCGc -3' miRNA: 3'- cCGGCU-CUCCGG---GUUUUUGCGcCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 47873 | 0.7 | 0.788873 |
Target: 5'- aGGCCaggacguacguGuAGAGGCUCAGcucGCGCGGUCc -3' miRNA: 3'- -CCGG-----------C-UCUCCGGGUUuu-UGCGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 182736 | 0.7 | 0.831964 |
Target: 5'- uGCCGc--GGCCCcagAAAGACGCGGUaCAg -3' miRNA: 3'- cCGGCucuCCGGG---UUUUUGCGCCA-GU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 55360 | 0.7 | 0.806577 |
Target: 5'- cGGCCGAGGcGGCCgAGGcggccGAgGCGGcCGa -3' miRNA: 3'- -CCGGCUCU-CCGGgUUU-----UUgCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 3522 | 0.7 | 0.806577 |
Target: 5'- uGGCCGAGugaGGGuCCCAGAgaaacugagucAACaggaugggggGCGGUCAa -3' miRNA: 3'- -CCGGCUC---UCC-GGGUUU-----------UUG----------CGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 92321 | 0.7 | 0.823668 |
Target: 5'- gGGCgGcGGGGGCCCGGGcGgGCGGcUCGg -3' miRNA: 3'- -CCGgC-UCUCCGGGUUUuUgCGCC-AGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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