miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 94032 0.76 0.467341
Target:  5'- cGCCGGcGGGCCCGAGAGCgGCGG-CGg -3'
miRNA:   3'- cCGGCUcUCCGGGUUUUUG-CGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 145341 0.76 0.504807
Target:  5'- gGGcCCGAGcGGGCCCGAgcuggGggUGUGGUCAc -3'
miRNA:   3'- -CC-GGCUC-UCCGGGUU-----UuuGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 11255 0.75 0.524022
Target:  5'- cGuaCGAGGGGUCgGGcGACGCGGUCAc -3'
miRNA:   3'- -CcgGCUCUCCGGgUUuUUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 121010 0.75 0.527899
Target:  5'- uGGCCGAgggucggccucccaaGAGGCCgGAGAGCGgCGcGUCGg -3'
miRNA:   3'- -CCGGCU---------------CUCCGGgUUUUUGC-GC-CAGU- -5'
10968 5' -55.4 NC_002794.1 + 63324 0.75 0.563228
Target:  5'- cGG-CGGGGGGCCCGA--GCGCGGa-- -3'
miRNA:   3'- -CCgGCUCUCCGGGUUuuUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 110976 0.74 0.583133
Target:  5'- aGCCGAGcacguaguccaGGGCCgucucggucuuCAGGAACGUGGUCAg -3'
miRNA:   3'- cCGGCUC-----------UCCGG-----------GUUUUUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 34738 0.74 0.593141
Target:  5'- cGGCCGcAGAGcGCgCGAcgGCGCGGUgGg -3'
miRNA:   3'- -CCGGC-UCUC-CGgGUUuuUGCGCCAgU- -5'
10968 5' -55.4 NC_002794.1 + 102202 0.73 0.642443
Target:  5'- cGGCCGccgugacGGAGGCCCucuucaccGAGC-CGGUCAa -3'
miRNA:   3'- -CCGGC-------UCUCCGGGuu------UUUGcGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 72565 0.73 0.653516
Target:  5'- cGGCCGGGAagagcccGCCCAAcAGCGCGuUCAg -3'
miRNA:   3'- -CCGGCUCUc------CGGGUUuUUGCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 111974 0.73 0.657538
Target:  5'- aGCCGAGcgucAGGUCCAccggcacgcccuGCGCGGUCAc -3'
miRNA:   3'- cCGGCUC----UCCGGGUuuu---------UGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 1209 0.73 0.663566
Target:  5'- gGGCCGAucGGGGCCCcGGGGCGUGuUCu -3'
miRNA:   3'- -CCGGCU--CUCCGGGuUUUUGCGCcAGu -5'
10968 5' -55.4 NC_002794.1 + 115733 0.73 0.663566
Target:  5'- cGGUCGGGGGGCCCuGGAucagguacgGCGCGaUCGg -3'
miRNA:   3'- -CCGGCUCUCCGGGuUUU---------UGCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 183162 0.73 0.673591
Target:  5'- cGGCCGGGcuGCCCGA--GC-CGGUCGg -3'
miRNA:   3'- -CCGGCUCucCGGGUUuuUGcGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 70294 0.73 0.673591
Target:  5'- aGGCCgGGGGGGCCCG--GGCGCGa--- -3'
miRNA:   3'- -CCGG-CUCUCCGGGUuuUUGCGCcagu -5'
10968 5' -55.4 NC_002794.1 + 56331 0.73 0.673591
Target:  5'- uGGCCGgcgacgcggcgaAGAGcaGCUCGAAGAgGCGGUCGa -3'
miRNA:   3'- -CCGGC------------UCUC--CGGGUUUUUgCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 143417 0.72 0.692541
Target:  5'- gGGCCGGGcgaAGGUCCGGAAggccagcAUGaCGGUCAc -3'
miRNA:   3'- -CCGGCUC---UCCGGGUUUU-------UGC-GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 110280 0.72 0.693534
Target:  5'- cGGCCGccguccucGGGCCCGAGAGcCGCGGg-- -3'
miRNA:   3'- -CCGGCuc------UCCGGGUUUUU-GCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 120063 0.72 0.703435
Target:  5'- cGGCCGcGGAGGCC----GACGCGG-CGg -3'
miRNA:   3'- -CCGGC-UCUCCGGguuuUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 187847 0.72 0.713278
Target:  5'- cGCCGAGGGcucuGCCCAGccgcGCGCGGcUCGc -3'
miRNA:   3'- cCGGCUCUC----CGGGUUuu--UGCGCC-AGU- -5'
10968 5' -55.4 NC_002794.1 + 56273 0.72 0.713278
Target:  5'- gGGCCGAGcagcAGGCggCAGAGcacgaugcgcGCGCGGUCGc -3'
miRNA:   3'- -CCGGCUC----UCCGg-GUUUU----------UGCGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.