miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 187847 0.72 0.713278
Target:  5'- cGCCGAGGGcucuGCCCAGccgcGCGCGGcUCGc -3'
miRNA:   3'- cCGGCUCUC----CGGGUUuu--UGCGCC-AGU- -5'
10968 5' -55.4 NC_002794.1 + 179109 0.72 0.713278
Target:  5'- cGGUCGuccGcGGUCCGGGcGCGCGGUCGg -3'
miRNA:   3'- -CCGGCu--CuCCGGGUUUuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 23892 0.72 0.731789
Target:  5'- cGCCGAG-GGCCCGGGAgccgagugcagcaGCGUGGgCGa -3'
miRNA:   3'- cCGGCUCuCCGGGUUUU-------------UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 126136 0.72 0.732755
Target:  5'- cGCCGGuuucuGGccGGCCCucuGGGACGCGGUCu -3'
miRNA:   3'- cCGGCU-----CU--CCGGGu--UUUUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 43666 0.71 0.742371
Target:  5'- aGCCGGGcucucGGGCCCG--GGCGCGGa-- -3'
miRNA:   3'- cCGGCUC-----UCCGGGUuuUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 138750 0.71 0.742371
Target:  5'- cGGCCcuccGGGGGCCgAGucGCGgCGGUCGg -3'
miRNA:   3'- -CCGGc---UCUCCGGgUUuuUGC-GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 141441 0.71 0.742371
Target:  5'- cGCCGGGGGcGCCgGGAGcgGCGCGG-CGu -3'
miRNA:   3'- cCGGCUCUC-CGGgUUUU--UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 178250 0.71 0.759438
Target:  5'- aGGCCGucGAGGgaagcgggcugaCCGGAGACGgGGUCGg -3'
miRNA:   3'- -CCGGCu-CUCCg-----------GGUUUUUGCgCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 192961 0.71 0.770623
Target:  5'- aGGCCGAcGAGccGUgCAGGAccaggGCGCGGUCGc -3'
miRNA:   3'- -CCGGCU-CUC--CGgGUUUU-----UGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 146002 0.71 0.770623
Target:  5'- cGGCCGccGGGgCCGGAGACGCcGUCc -3'
miRNA:   3'- -CCGGCucUCCgGGUUUUUGCGcCAGu -5'
10968 5' -55.4 NC_002794.1 + 185368 0.71 0.770623
Target:  5'- gGGCCGAacgccgcgagcGAGGCCagccagaagaCGAGGGCGCGGg-- -3'
miRNA:   3'- -CCGGCU-----------CUCCGG----------GUUUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 147221 0.71 0.778899
Target:  5'- gGGCCGGGgcguuggcgcgauGGGCCCGAGAGCacucCGGgCAg -3'
miRNA:   3'- -CCGGCUC-------------UCCGGGUUUUUGc---GCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 147578 0.71 0.779812
Target:  5'- aGGCCGAGcGGCacaCCGAGGcgcuCGCGGUg- -3'
miRNA:   3'- -CCGGCUCuCCG---GGUUUUu---GCGCCAgu -5'
10968 5' -55.4 NC_002794.1 + 44301 0.7 0.788873
Target:  5'- gGGCCGGcGAGGCggggagcgaCCGcGAGCGCGG-CGg -3'
miRNA:   3'- -CCGGCU-CUCCG---------GGUuUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 47873 0.7 0.788873
Target:  5'- aGGCCaggacguacguGuAGAGGCUCAGcucGCGCGGUCc -3'
miRNA:   3'- -CCGG-----------C-UCUCCGGGUUuu-UGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 128077 0.7 0.806577
Target:  5'- gGGCCGAauGGCCCGAGucGGCGaCGGg-- -3'
miRNA:   3'- -CCGGCUcuCCGGGUUU--UUGC-GCCagu -5'
10968 5' -55.4 NC_002794.1 + 55360 0.7 0.806577
Target:  5'- cGGCCGAGGcGGCCgAGGcggccGAgGCGGcCGa -3'
miRNA:   3'- -CCGGCUCU-CCGGgUUU-----UUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 3522 0.7 0.806577
Target:  5'- uGGCCGAGugaGGGuCCCAGAgaaacugagucAACaggaugggggGCGGUCAa -3'
miRNA:   3'- -CCGGCUC---UCC-GGGUUU-----------UUG----------CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 149657 0.7 0.815203
Target:  5'- cGCCGAgGAGGCCgagCGGGGGCGC-GUCGc -3'
miRNA:   3'- cCGGCU-CUCCGG---GUUUUUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 92321 0.7 0.823668
Target:  5'- gGGCgGcGGGGGCCCGGGcGgGCGGcUCGg -3'
miRNA:   3'- -CCGgC-UCUCCGGGUUUuUgCGCC-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.