miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 182736 0.7 0.831964
Target:  5'- uGCCGc--GGCCCcagAAAGACGCGGUaCAg -3'
miRNA:   3'- cCGGCucuCCGGG---UUUUUGCGCCA-GU- -5'
10968 5' -55.4 NC_002794.1 + 112525 0.69 0.848021
Target:  5'- uGGCgCaGGAGGUCCAAGAAguaGCGGUa- -3'
miRNA:   3'- -CCG-GcUCUCCGGGUUUUUg--CGCCAgu -5'
10968 5' -55.4 NC_002794.1 + 185180 0.69 0.848021
Target:  5'- cGGCgCGGucGGCgCGGucGGCGCGGUCAu -3'
miRNA:   3'- -CCG-GCUcuCCGgGUUu-UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 22722 0.69 0.848021
Target:  5'- cGCCGAGA-GCCgGcGAACGguCGGUCAg -3'
miRNA:   3'- cCGGCUCUcCGGgUuUUUGC--GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 98939 0.69 0.855768
Target:  5'- cGGCCGGGAaggggcuggGGCUCGugcuGGGCGCcGUCGg -3'
miRNA:   3'- -CCGGCUCU---------CCGGGUu---UUUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 140015 0.69 0.863318
Target:  5'- aGGCCGcGGAGGCCgCGGccccCGCGGgCGg -3'
miRNA:   3'- -CCGGC-UCUCCGG-GUUuuu-GCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 109740 0.69 0.863318
Target:  5'- -aCCGAGAGGCCCG--GACGU--UCAg -3'
miRNA:   3'- ccGGCUCUCCGGGUuuUUGCGccAGU- -5'
10968 5' -55.4 NC_002794.1 + 141602 0.69 0.863318
Target:  5'- cGCCGGGcGGCUCGGcgaccggcuCGCGGUCu -3'
miRNA:   3'- cCGGCUCuCCGGGUUuuu------GCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 76536 0.69 0.870667
Target:  5'- cGGCCGc--GGCgCCG---ACGCGGUCGc -3'
miRNA:   3'- -CCGGCucuCCG-GGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 123263 0.68 0.877808
Target:  5'- cGCCGGcuGGUCCGGGc-CGCGGUCGu -3'
miRNA:   3'- cCGGCUcuCCGGGUUUuuGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 187335 0.68 0.877808
Target:  5'- aGCCG-GAGcagcaGCCCGucguuCGCGGUCAc -3'
miRNA:   3'- cCGGCuCUC-----CGGGUuuuu-GCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 151962 0.68 0.884737
Target:  5'- cGGCCccGGGugcuccucGGCCC-GGGACGUGGUCu -3'
miRNA:   3'- -CCGG--CUCu-------CCGGGuUUUUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 90957 0.68 0.884737
Target:  5'- cGCCGAGgcccGGGCCCGcuucGGCGUGGccUCGu -3'
miRNA:   3'- cCGGCUC----UCCGGGUuu--UUGCGCC--AGU- -5'
10968 5' -55.4 NC_002794.1 + 124113 0.68 0.884737
Target:  5'- gGGCCGGGucGaCUCGAGAGCGCG-UCu -3'
miRNA:   3'- -CCGGCUCucC-GGGUUUUUGCGCcAGu -5'
10968 5' -55.4 NC_002794.1 + 96364 0.68 0.890788
Target:  5'- uGGCCGAG-GGCaCCGu-GGCGCcgagcgaguggauGGUCGc -3'
miRNA:   3'- -CCGGCUCuCCG-GGUuuUUGCG-------------CCAGU- -5'
10968 5' -55.4 NC_002794.1 + 117621 0.68 0.891449
Target:  5'- cGCCGAGcgacaGGGCgCCGAccGCGCGGcCc -3'
miRNA:   3'- cCGGCUC-----UCCG-GGUUuuUGCGCCaGu -5'
10968 5' -55.4 NC_002794.1 + 191720 0.68 0.891449
Target:  5'- cGuCCGAGcGGCCCAcgGACGCGa--- -3'
miRNA:   3'- cC-GGCUCuCCGGGUuuUUGCGCcagu -5'
10968 5' -55.4 NC_002794.1 + 63171 0.68 0.904208
Target:  5'- cGGCCGA--GGCCgCGAa---GCGGUCGc -3'
miRNA:   3'- -CCGGCUcuCCGG-GUUuuugCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 49429 0.68 0.904208
Target:  5'- cGGCCGucacGGcGUCCG---GCGCGGUCGu -3'
miRNA:   3'- -CCGGCuc--UC-CGGGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 113883 0.68 0.904208
Target:  5'- cGGCCGcGGcGCgCGucGGCGCGGUCu -3'
miRNA:   3'- -CCGGCuCUcCGgGUuuUUGCGCCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.