miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 605 0.66 0.946078
Target:  5'- uGGCCGGGugcggucaggcGGCCCGGuGugGCGuUCGc -3'
miRNA:   3'- -CCGGCUCu----------CCGGGUUuUugCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 184482 0.66 0.946078
Target:  5'- cGGCgCGcGGGGCCCcGGAcgcccgggcgGCGCGGg-- -3'
miRNA:   3'- -CCG-GCuCUCCGGGuUUU----------UGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 187562 0.66 0.945211
Target:  5'- cGCCGucGGGCCCGuacccgccgucGGCGCGGcCGc -3'
miRNA:   3'- cCGGCucUCCGGGUuu---------UUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 49024 0.66 0.941651
Target:  5'- cGGCCGcggcGucGUCCG---GCGCGGUCGu -3'
miRNA:   3'- -CCGGCu---CucCGGGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 82452 0.66 0.941651
Target:  5'- cGGCaCGGucGGCCCGAccucGACGCcGUCGg -3'
miRNA:   3'- -CCG-GCUcuCCGGGUUu---UUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 14607 0.66 0.941651
Target:  5'- cGCCGGGcaccgcgacGGGgCCGGAGACGgGGcCGg -3'
miRNA:   3'- cCGGCUC---------UCCgGGUUUUUGCgCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 130324 0.66 0.940279
Target:  5'- uGGCCGAGAcggcggacgaaggcGGCgacgacgacgCCGAcGACGaCGGUCu -3'
miRNA:   3'- -CCGGCUCU--------------CCG----------GGUUuUUGC-GCCAGu -5'
10968 5' -55.4 NC_002794.1 + 145928 0.67 0.936995
Target:  5'- aGCgGAGGGGCCgGcGAGaGCGGUUc -3'
miRNA:   3'- cCGgCUCUCCGGgUuUUUgCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 44350 0.67 0.936995
Target:  5'- cGCCGGcGAGa-CCGAGAGCGCGG-CGg -3'
miRNA:   3'- cCGGCU-CUCcgGGUUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 95827 0.67 0.936995
Target:  5'- cGGCCGGGGGaGCggcggcggcggCCGGGGAgGCGG-CGg -3'
miRNA:   3'- -CCGGCUCUC-CG-----------GGUUUUUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 78223 0.67 0.936995
Target:  5'- gGGCCGAGAGGCUCucucuAGCcagaCGGcUCc -3'
miRNA:   3'- -CCGGCUCUCCGGGuuu--UUGc---GCC-AGu -5'
10968 5' -55.4 NC_002794.1 + 67955 0.67 0.936995
Target:  5'- -aCCGAGgacggcGGGCCCAGAcGgGuCGGUCGc -3'
miRNA:   3'- ccGGCUC------UCCGGGUUUuUgC-GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 112164 0.67 0.936995
Target:  5'- -cCCGAcGAGGCUCu---GCGCGGcCAg -3'
miRNA:   3'- ccGGCU-CUCCGGGuuuuUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 135875 0.67 0.936995
Target:  5'- aGCCGAcGAGGuCCCucGGACaGCGGa-- -3'
miRNA:   3'- cCGGCU-CUCC-GGGuuUUUG-CGCCagu -5'
10968 5' -55.4 NC_002794.1 + 51473 0.67 0.932109
Target:  5'- uGGUCGAcGAGGCCCAuuucaucaagaAAGACGCcuUUAa -3'
miRNA:   3'- -CCGGCU-CUCCGGGU-----------UUUUGCGccAGU- -5'
10968 5' -55.4 NC_002794.1 + 35647 0.67 0.932109
Target:  5'- -cCCGGGAcggGcGCCCGGucuccGACGUGGUCAa -3'
miRNA:   3'- ccGGCUCU---C-CGGGUUu----UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 109956 0.67 0.926991
Target:  5'- gGGCCGGGGGGUCCAGcc-CGCu---- -3'
miRNA:   3'- -CCGGCUCUCCGGGUUuuuGCGccagu -5'
10968 5' -55.4 NC_002794.1 + 55396 0.67 0.926991
Target:  5'- cGGCCGAGGcGGCC----GAgGCGGcCGa -3'
miRNA:   3'- -CCGGCUCU-CCGGguuuUUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 110727 0.67 0.926991
Target:  5'- aGGUCGGGGGGUCUcuccAGAUGCuGUCGg -3'
miRNA:   3'- -CCGGCUCUCCGGGuu--UUUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 23694 0.67 0.92541
Target:  5'- cGCCGccGAGGCCCcGAAgcgucccgaaccgcGCGCGG-CGg -3'
miRNA:   3'- cCGGCu-CUCCGGGuUUU--------------UGCGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.