miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 30061 0.67 0.921641
Target:  5'- gGGcCCGcGGGGUCCGGucGCcCGGUCGa -3'
miRNA:   3'- -CC-GGCuCUCCGGGUUuuUGcGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 32612 0.67 0.921641
Target:  5'- gGGCCGGGgaucGGGCCCGccGACGaagaGGg-- -3'
miRNA:   3'- -CCGGCUC----UCCGGGUuuUUGCg---CCagu -5'
10968 5' -55.4 NC_002794.1 + 38603 0.67 0.921641
Target:  5'- cGGaCGAGAGGCCgGAcGGGCGC-GUCc -3'
miRNA:   3'- -CCgGCUCUCCGGgUU-UUUGCGcCAGu -5'
10968 5' -55.4 NC_002794.1 + 104499 0.67 0.921641
Target:  5'- cGGCCGGGucgggcgagaacGGGCU--GAGGCGCGGg-- -3'
miRNA:   3'- -CCGGCUC------------UCCGGguUUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 130230 0.67 0.921641
Target:  5'- gGGCUccuGAGAGGCCuCGAGGAgguucUGCGGg-- -3'
miRNA:   3'- -CCGG---CUCUCCGG-GUUUUU-----GCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 102088 0.67 0.921641
Target:  5'- gGGCCGAcGAGccgccGCCCAcgguGCG-GGUCAu -3'
miRNA:   3'- -CCGGCU-CUC-----CGGGUuuu-UGCgCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 185276 0.67 0.921641
Target:  5'- cGGCCGAGuGGGCCgccGGACa-GGUCAg -3'
miRNA:   3'- -CCGGCUC-UCCGGguuUUUGcgCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 154351 0.67 0.921641
Target:  5'- cGGCCGAGcu-CCC----GCGCGGUCc -3'
miRNA:   3'- -CCGGCUCuccGGGuuuuUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 103573 0.67 0.921641
Target:  5'- cGCCGu--GGCCgAcGAGCaGCGGUCGg -3'
miRNA:   3'- cCGGCucuCCGGgUuUUUG-CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 23606 0.67 0.91606
Target:  5'- cGCCGAcccgaccccgcGGGcGCCCGGAcGCGCGGcccUCGa -3'
miRNA:   3'- cCGGCU-----------CUC-CGGGUUUuUGCGCC---AGU- -5'
10968 5' -55.4 NC_002794.1 + 75482 0.67 0.91606
Target:  5'- cGCCGAGAcGGCCCGcguacGAGC-CGG-CAa -3'
miRNA:   3'- cCGGCUCU-CCGGGUu----UUUGcGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 18830 0.67 0.91606
Target:  5'- cGGCCGgcgcGGAGGagaCCucGAGCGCGccGUCGc -3'
miRNA:   3'- -CCGGC----UCUCCg--GGuuUUUGCGC--CAGU- -5'
10968 5' -55.4 NC_002794.1 + 31156 0.67 0.915489
Target:  5'- aGGCguAGAuGGCCUguucgcaGGAGAUGCGGUCGa -3'
miRNA:   3'- -CCGgcUCU-CCGGG-------UUUUUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 145403 0.68 0.910249
Target:  5'- cGCCGcGcGGCCUuAAAGCGCGG-CGc -3'
miRNA:   3'- cCGGCuCuCCGGGuUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 89321 0.68 0.910249
Target:  5'- cGGUCGAGAGaa-CGGGGACGCGG-CGg -3'
miRNA:   3'- -CCGGCUCUCcggGUUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 86648 0.68 0.910249
Target:  5'- aGCCGGGAcggaugcuccGGCCCGAGcccGAC-CGGUUg -3'
miRNA:   3'- cCGGCUCU----------CCGGGUUU---UUGcGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 103090 0.68 0.910249
Target:  5'- cGUCGc--GGCCCGcgcGCGCGGUCAc -3'
miRNA:   3'- cCGGCucuCCGGGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 128776 0.68 0.910249
Target:  5'- gGGCCGGGuGGacuCCCGAGAGCaugaauccGCGG-CAc -3'
miRNA:   3'- -CCGGCUCuCC---GGGUUUUUG--------CGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 6493 0.68 0.910249
Target:  5'- aGGCCGAGAuGaCCCu----CGCGGUgGg -3'
miRNA:   3'- -CCGGCUCUcC-GGGuuuuuGCGCCAgU- -5'
10968 5' -55.4 NC_002794.1 + 110518 0.68 0.904208
Target:  5'- cGGUCGAGAucGGCgUgcggGAGAACGCGG-CGa -3'
miRNA:   3'- -CCGGCUCU--CCGgG----UUUUUGCGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.