Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10968 | 5' | -55.4 | NC_002794.1 | + | 49429 | 0.68 | 0.904208 |
Target: 5'- cGGCCGucacGGcGUCCG---GCGCGGUCGu -3' miRNA: 3'- -CCGGCuc--UC-CGGGUuuuUGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 124407 | 0.68 | 0.904208 |
Target: 5'- cGGUCGucGGGGCgCCGuccgcCGCGGUCu -3' miRNA: 3'- -CCGGCu-CUCCG-GGUuuuu-GCGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 110518 | 0.68 | 0.904208 |
Target: 5'- cGGUCGAGAucGGCgUgcggGAGAACGCGG-CGa -3' miRNA: 3'- -CCGGCUCU--CCGgG----UUUUUGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 113883 | 0.68 | 0.904208 |
Target: 5'- cGGCCGcGGcGCgCGucGGCGCGGUCu -3' miRNA: 3'- -CCGGCuCUcCGgGUuuUUGCGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 191720 | 0.68 | 0.891449 |
Target: 5'- cGuCCGAGcGGCCCAcgGACGCGa--- -3' miRNA: 3'- cC-GGCUCuCCGGGUuuUUGCGCcagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 117621 | 0.68 | 0.891449 |
Target: 5'- cGCCGAGcgacaGGGCgCCGAccGCGCGGcCc -3' miRNA: 3'- cCGGCUC-----UCCG-GGUUuuUGCGCCaGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 96364 | 0.68 | 0.890788 |
Target: 5'- uGGCCGAG-GGCaCCGu-GGCGCcgagcgaguggauGGUCGc -3' miRNA: 3'- -CCGGCUCuCCG-GGUuuUUGCG-------------CCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 90957 | 0.68 | 0.884737 |
Target: 5'- cGCCGAGgcccGGGCCCGcuucGGCGUGGccUCGu -3' miRNA: 3'- cCGGCUC----UCCGGGUuu--UUGCGCC--AGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 124113 | 0.68 | 0.884737 |
Target: 5'- gGGCCGGGucGaCUCGAGAGCGCG-UCu -3' miRNA: 3'- -CCGGCUCucC-GGGUUUUUGCGCcAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 151962 | 0.68 | 0.884737 |
Target: 5'- cGGCCccGGGugcuccucGGCCC-GGGACGUGGUCu -3' miRNA: 3'- -CCGG--CUCu-------CCGGGuUUUUGCGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 187335 | 0.68 | 0.877808 |
Target: 5'- aGCCG-GAGcagcaGCCCGucguuCGCGGUCAc -3' miRNA: 3'- cCGGCuCUC-----CGGGUuuuu-GCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 123263 | 0.68 | 0.877808 |
Target: 5'- cGCCGGcuGGUCCGGGc-CGCGGUCGu -3' miRNA: 3'- cCGGCUcuCCGGGUUUuuGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 76536 | 0.69 | 0.870667 |
Target: 5'- cGGCCGc--GGCgCCG---ACGCGGUCGc -3' miRNA: 3'- -CCGGCucuCCG-GGUuuuUGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 141602 | 0.69 | 0.863318 |
Target: 5'- cGCCGGGcGGCUCGGcgaccggcuCGCGGUCu -3' miRNA: 3'- cCGGCUCuCCGGGUUuuu------GCGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 140015 | 0.69 | 0.863318 |
Target: 5'- aGGCCGcGGAGGCCgCGGccccCGCGGgCGg -3' miRNA: 3'- -CCGGC-UCUCCGG-GUUuuu-GCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 109740 | 0.69 | 0.863318 |
Target: 5'- -aCCGAGAGGCCCG--GACGU--UCAg -3' miRNA: 3'- ccGGCUCUCCGGGUuuUUGCGccAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 98939 | 0.69 | 0.855768 |
Target: 5'- cGGCCGGGAaggggcuggGGCUCGugcuGGGCGCcGUCGg -3' miRNA: 3'- -CCGGCUCU---------CCGGGUu---UUUGCGcCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 185180 | 0.69 | 0.848021 |
Target: 5'- cGGCgCGGucGGCgCGGucGGCGCGGUCAu -3' miRNA: 3'- -CCG-GCUcuCCGgGUUu-UUGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 112525 | 0.69 | 0.848021 |
Target: 5'- uGGCgCaGGAGGUCCAAGAAguaGCGGUa- -3' miRNA: 3'- -CCG-GcUCUCCGGGUUUUUg--CGCCAgu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 22722 | 0.69 | 0.848021 |
Target: 5'- cGCCGAGA-GCCgGcGAACGguCGGUCAg -3' miRNA: 3'- cCGGCUCUcCGGgUuUUUGC--GCCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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