miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 605 0.66 0.946078
Target:  5'- uGGCCGGGugcggucaggcGGCCCGGuGugGCGuUCGc -3'
miRNA:   3'- -CCGGCUCu----------CCGGGUUuUugCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 1209 0.73 0.663566
Target:  5'- gGGCCGAucGGGGCCCcGGGGCGUGuUCu -3'
miRNA:   3'- -CCGGCU--CUCCGGGuUUUUGCGCcAGu -5'
10968 5' -55.4 NC_002794.1 + 3522 0.7 0.806577
Target:  5'- uGGCCGAGugaGGGuCCCAGAgaaacugagucAACaggaugggggGCGGUCAa -3'
miRNA:   3'- -CCGGCUC---UCC-GGGUUU-----------UUG----------CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 6493 0.68 0.910249
Target:  5'- aGGCCGAGAuGaCCCu----CGCGGUgGg -3'
miRNA:   3'- -CCGGCUCUcC-GGGuuuuuGCGCCAgU- -5'
10968 5' -55.4 NC_002794.1 + 11255 0.75 0.524022
Target:  5'- cGuaCGAGGGGUCgGGcGACGCGGUCAc -3'
miRNA:   3'- -CcgGCUCUCCGGgUUuUUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 14607 0.66 0.941651
Target:  5'- cGCCGGGcaccgcgacGGGgCCGGAGACGgGGcCGg -3'
miRNA:   3'- cCGGCUC---------UCCgGGUUUUUGCgCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 16384 0.66 0.950278
Target:  5'- cGGCCG---GGUCCGAAcccaaGCGGUCGu -3'
miRNA:   3'- -CCGGCucuCCGGGUUUuug--CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 18830 0.67 0.91606
Target:  5'- cGGCCGgcgcGGAGGagaCCucGAGCGCGccGUCGc -3'
miRNA:   3'- -CCGGC----UCUCCg--GGuuUUUGCGC--CAGU- -5'
10968 5' -55.4 NC_002794.1 + 22722 0.69 0.848021
Target:  5'- cGCCGAGA-GCCgGcGAACGguCGGUCAg -3'
miRNA:   3'- cCGGCUCUcCGGgUuUUUGC--GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 23606 0.67 0.91606
Target:  5'- cGCCGAcccgaccccgcGGGcGCCCGGAcGCGCGGcccUCGa -3'
miRNA:   3'- cCGGCU-----------CUC-CGGGUUUuUGCGCC---AGU- -5'
10968 5' -55.4 NC_002794.1 + 23694 0.67 0.92541
Target:  5'- cGCCGccGAGGCCCcGAAgcgucccgaaccgcGCGCGG-CGg -3'
miRNA:   3'- cCGGCu-CUCCGGGuUUU--------------UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 23892 0.72 0.731789
Target:  5'- cGCCGAG-GGCCCGGGAgccgagugcagcaGCGUGGgCGa -3'
miRNA:   3'- cCGGCUCuCCGGGUUUU-------------UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 30061 0.67 0.921641
Target:  5'- gGGcCCGcGGGGUCCGGucGCcCGGUCGa -3'
miRNA:   3'- -CC-GGCuCUCCGGGUUuuUGcGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 30842 0.66 0.961548
Target:  5'- uGGUCGgcGGAGGCUUcgcguaccagguGAAGAaGCGGUCGg -3'
miRNA:   3'- -CCGGC--UCUCCGGG------------UUUUUgCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 31156 0.67 0.915489
Target:  5'- aGGCguAGAuGGCCUguucgcaGGAGAUGCGGUCGa -3'
miRNA:   3'- -CCGgcUCU-CCGGG-------UUUUUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 32612 0.67 0.921641
Target:  5'- gGGCCGGGgaucGGGCCCGccGACGaagaGGg-- -3'
miRNA:   3'- -CCGGCUC----UCCGGGUuuUUGCg---CCagu -5'
10968 5' -55.4 NC_002794.1 + 34704 0.66 0.950278
Target:  5'- cGCC-AGcAGGCCCGccggcgccacGAGGCGCGGg-- -3'
miRNA:   3'- cCGGcUC-UCCGGGU----------UUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 34738 0.74 0.593141
Target:  5'- cGGCCGcAGAGcGCgCGAcgGCGCGGUgGg -3'
miRNA:   3'- -CCGGC-UCUC-CGgGUUuuUGCGCCAgU- -5'
10968 5' -55.4 NC_002794.1 + 35647 0.67 0.932109
Target:  5'- -cCCGGGAcggGcGCCCGGucuccGACGUGGUCAa -3'
miRNA:   3'- ccGGCUCU---C-CGGGUUu----UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 37551 0.66 0.961204
Target:  5'- cGCCgGAGGGGCCaCGAccgcgucuccGAGCcgucgaacagauaGCGGUCGc -3'
miRNA:   3'- cCGG-CUCUCCGG-GUU----------UUUG-------------CGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.