miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 38603 0.67 0.921641
Target:  5'- cGGaCGAGAGGCCgGAcGGGCGC-GUCc -3'
miRNA:   3'- -CCgGCUCUCCGGgUU-UUUGCGcCAGu -5'
10968 5' -55.4 NC_002794.1 + 43666 0.71 0.742371
Target:  5'- aGCCGGGcucucGGGCCCG--GGCGCGGa-- -3'
miRNA:   3'- cCGGCUC-----UCCGGGUuuUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 44301 0.7 0.788873
Target:  5'- gGGCCGGcGAGGCggggagcgaCCGcGAGCGCGG-CGg -3'
miRNA:   3'- -CCGGCU-CUCCG---------GGUuUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 44350 0.67 0.936995
Target:  5'- cGCCGGcGAGa-CCGAGAGCGCGG-CGg -3'
miRNA:   3'- cCGGCU-CUCcgGGUUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 44511 0.66 0.954254
Target:  5'- cGGCCcAGAccgGGCCCGuguccgcGAGCGCGccGUCGu -3'
miRNA:   3'- -CCGGcUCU---CCGGGUu------UUUGCGC--CAGU- -5'
10968 5' -55.4 NC_002794.1 + 47783 0.66 0.954254
Target:  5'- aGGUCGAGcGGCCgCAGu-ACaCGGUCu -3'
miRNA:   3'- -CCGGCUCuCCGG-GUUuuUGcGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 47873 0.7 0.788873
Target:  5'- aGGCCaggacguacguGuAGAGGCUCAGcucGCGCGGUCc -3'
miRNA:   3'- -CCGG-----------C-UCUCCGGGUUuu-UGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 49024 0.66 0.941651
Target:  5'- cGGCCGcggcGucGUCCG---GCGCGGUCGu -3'
miRNA:   3'- -CCGGCu---CucCGGGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 49429 0.68 0.904208
Target:  5'- cGGCCGucacGGcGUCCG---GCGCGGUCGu -3'
miRNA:   3'- -CCGGCuc--UC-CGGGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 51269 0.72 0.713278
Target:  5'- gGGCCGGGAGGCa----GGCGCGGcCc -3'
miRNA:   3'- -CCGGCUCUCCGgguuuUUGCGCCaGu -5'
10968 5' -55.4 NC_002794.1 + 51473 0.67 0.932109
Target:  5'- uGGUCGAcGAGGCCCAuuucaucaagaAAGACGCcuUUAa -3'
miRNA:   3'- -CCGGCU-CUCCGGGU-----------UUUUGCGccAGU- -5'
10968 5' -55.4 NC_002794.1 + 54244 0.66 0.95801
Target:  5'- cGGCCGAGcgcgcGGUCCAc-GGCGcCGcGUCGg -3'
miRNA:   3'- -CCGGCUCu----CCGGGUuuUUGC-GC-CAGU- -5'
10968 5' -55.4 NC_002794.1 + 55360 0.7 0.806577
Target:  5'- cGGCCGAGGcGGCCgAGGcggccGAgGCGGcCGa -3'
miRNA:   3'- -CCGGCUCU-CCGGgUUU-----UUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 55396 0.67 0.926991
Target:  5'- cGGCCGAGGcGGCC----GAgGCGGcCGa -3'
miRNA:   3'- -CCGGCUCU-CCGGguuuUUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 56273 0.72 0.713278
Target:  5'- gGGCCGAGcagcAGGCggCAGAGcacgaugcgcGCGCGGUCGc -3'
miRNA:   3'- -CCGGCUC----UCCGg-GUUUU----------UGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 56331 0.73 0.673591
Target:  5'- uGGCCGgcgacgcggcgaAGAGcaGCUCGAAGAgGCGGUCGa -3'
miRNA:   3'- -CCGGC------------UCUC--CGGGUUUUUgCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 63171 0.68 0.904208
Target:  5'- cGGCCGA--GGCCgCGAa---GCGGUCGc -3'
miRNA:   3'- -CCGGCUcuCCGG-GUUuuugCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 63324 0.75 0.563228
Target:  5'- cGG-CGGGGGGCCCGA--GCGCGGa-- -3'
miRNA:   3'- -CCgGCUCUCCGGGUUuuUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 67955 0.67 0.936995
Target:  5'- -aCCGAGgacggcGGGCCCAGAcGgGuCGGUCGc -3'
miRNA:   3'- ccGGCUC------UCCGGGUUUuUgC-GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 70294 0.73 0.673591
Target:  5'- aGGCCgGGGGGGCCCG--GGCGCGa--- -3'
miRNA:   3'- -CCGG-CUCUCCGGGUuuUUGCGCcagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.