miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 71255 0.66 0.95801
Target:  5'- cGGCaCGuagaacuuGAGGUCC----GCGCGGUCc -3'
miRNA:   3'- -CCG-GCu-------CUCCGGGuuuuUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 72565 0.73 0.653516
Target:  5'- cGGCCGGGAagagcccGCCCAAcAGCGCGuUCAg -3'
miRNA:   3'- -CCGGCUCUc------CGGGUUuUUGCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 75482 0.67 0.91606
Target:  5'- cGCCGAGAcGGCCCGcguacGAGC-CGG-CAa -3'
miRNA:   3'- cCGGCUCU-CCGGGUu----UUUGcGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 76536 0.69 0.870667
Target:  5'- cGGCCGc--GGCgCCG---ACGCGGUCGc -3'
miRNA:   3'- -CCGGCucuCCG-GGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 78223 0.67 0.936995
Target:  5'- gGGCCGAGAGGCUCucucuAGCcagaCGGcUCc -3'
miRNA:   3'- -CCGGCUCUCCGGGuuu--UUGc---GCC-AGu -5'
10968 5' -55.4 NC_002794.1 + 82452 0.66 0.941651
Target:  5'- cGGCaCGGucGGCCCGAccucGACGCcGUCGg -3'
miRNA:   3'- -CCG-GCUcuCCGGGUUu---UUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 84770 0.66 0.961548
Target:  5'- gGGCCGuccGAGGCCCG---GCcCGGcUCu -3'
miRNA:   3'- -CCGGCu--CUCCGGGUuuuUGcGCC-AGu -5'
10968 5' -55.4 NC_002794.1 + 86648 0.68 0.910249
Target:  5'- aGCCGGGAcggaugcuccGGCCCGAGcccGAC-CGGUUg -3'
miRNA:   3'- cCGGCUCU----------CCGGGUUU---UUGcGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 89321 0.68 0.910249
Target:  5'- cGGUCGAGAGaa-CGGGGACGCGG-CGg -3'
miRNA:   3'- -CCGGCUCUCcggGUUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 89913 0.66 0.954254
Target:  5'- cGGCCcguuGGCgCUAGAGGCGCGGg-- -3'
miRNA:   3'- -CCGGcucuCCG-GGUUUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 90957 0.68 0.884737
Target:  5'- cGCCGAGgcccGGGCCCGcuucGGCGUGGccUCGu -3'
miRNA:   3'- cCGGCUC----UCCGGGUuu--UUGCGCC--AGU- -5'
10968 5' -55.4 NC_002794.1 + 92321 0.7 0.823668
Target:  5'- gGGCgGcGGGGGCCCGGGcGgGCGGcUCGg -3'
miRNA:   3'- -CCGgC-UCUCCGGGUUUuUgCGCC-AGU- -5'
10968 5' -55.4 NC_002794.1 + 94032 0.76 0.467341
Target:  5'- cGCCGGcGGGCCCGAGAGCgGCGG-CGg -3'
miRNA:   3'- cCGGCUcUCCGGGUUUUUG-CGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 95827 0.67 0.936995
Target:  5'- cGGCCGGGGGaGCggcggcggcggCCGGGGAgGCGG-CGg -3'
miRNA:   3'- -CCGGCUCUC-CG-----------GGUUUUUgCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 96364 0.68 0.890788
Target:  5'- uGGCCGAG-GGCaCCGu-GGCGCcgagcgaguggauGGUCGc -3'
miRNA:   3'- -CCGGCUCuCCG-GGUuuUUGCG-------------CCAGU- -5'
10968 5' -55.4 NC_002794.1 + 98939 0.69 0.855768
Target:  5'- cGGCCGGGAaggggcuggGGCUCGugcuGGGCGCcGUCGg -3'
miRNA:   3'- -CCGGCUCU---------CCGGGUu---UUUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 100476 0.66 0.950278
Target:  5'- uGGCgGAGAa-CCUGGAcGACGUGGUCAu -3'
miRNA:   3'- -CCGgCUCUccGGGUUU-UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 101591 0.66 0.950278
Target:  5'- cGGCCGGGGgggcgggugccGGCCCGccGGGCGgGGg-- -3'
miRNA:   3'- -CCGGCUCU-----------CCGGGUu-UUUGCgCCagu -5'
10968 5' -55.4 NC_002794.1 + 101698 0.66 0.961548
Target:  5'- -cCCGAGccGGcGCCCGAGGACGUGuUCGu -3'
miRNA:   3'- ccGGCUC--UC-CGGGUUUUUGCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 102088 0.67 0.921641
Target:  5'- gGGCCGAcGAGccgccGCCCAcgguGCG-GGUCAu -3'
miRNA:   3'- -CCGGCU-CUC-----CGGGUuuu-UGCgCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.