miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 102202 0.73 0.642443
Target:  5'- cGGCCGccgugacGGAGGCCCucuucaccGAGC-CGGUCAa -3'
miRNA:   3'- -CCGGC-------UCUCCGGGuu------UUUGcGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 102299 0.66 0.950278
Target:  5'- cGGCCGGGucuucGGCUCc--GACGCGcucGUCAu -3'
miRNA:   3'- -CCGGCUCu----CCGGGuuuUUGCGC---CAGU- -5'
10968 5' -55.4 NC_002794.1 + 102751 0.66 0.954254
Target:  5'- uGGCCGAG-GaCCCGGAcuACGUGGcCGc -3'
miRNA:   3'- -CCGGCUCuCcGGGUUUu-UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 103090 0.68 0.910249
Target:  5'- cGUCGc--GGCCCGcgcGCGCGGUCAc -3'
miRNA:   3'- cCGGCucuCCGGGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 103573 0.67 0.921641
Target:  5'- cGCCGu--GGCCgAcGAGCaGCGGUCGg -3'
miRNA:   3'- cCGGCucuCCGGgUuUUUG-CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 104499 0.67 0.921641
Target:  5'- cGGCCGGGucgggcgagaacGGGCU--GAGGCGCGGg-- -3'
miRNA:   3'- -CCGGCUC------------UCCGGguUUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 109740 0.69 0.863318
Target:  5'- -aCCGAGAGGCCCG--GACGU--UCAg -3'
miRNA:   3'- ccGGCUCUCCGGGUuuUUGCGccAGU- -5'
10968 5' -55.4 NC_002794.1 + 109956 0.67 0.926991
Target:  5'- gGGCCGGGGGGUCCAGcc-CGCu---- -3'
miRNA:   3'- -CCGGCUCUCCGGGUUuuuGCGccagu -5'
10968 5' -55.4 NC_002794.1 + 110280 0.72 0.693534
Target:  5'- cGGCCGccguccucGGGCCCGAGAGcCGCGGg-- -3'
miRNA:   3'- -CCGGCuc------UCCGGGUUUUU-GCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 110518 0.68 0.904208
Target:  5'- cGGUCGAGAucGGCgUgcggGAGAACGCGG-CGa -3'
miRNA:   3'- -CCGGCUCU--CCGgG----UUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 110727 0.67 0.926991
Target:  5'- aGGUCGGGGGGUCUcuccAGAUGCuGUCGg -3'
miRNA:   3'- -CCGGCUCUCCGGGuu--UUUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 110976 0.74 0.583133
Target:  5'- aGCCGAGcacguaguccaGGGCCgucucggucuuCAGGAACGUGGUCAg -3'
miRNA:   3'- cCGGCUC-----------UCCGG-----------GUUUUUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 111974 0.73 0.657538
Target:  5'- aGCCGAGcgucAGGUCCAccggcacgcccuGCGCGGUCAc -3'
miRNA:   3'- cCGGCUC----UCCGGGUuuu---------UGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 112164 0.67 0.936995
Target:  5'- -cCCGAcGAGGCUCu---GCGCGGcCAg -3'
miRNA:   3'- ccGGCU-CUCCGGGuuuuUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 112525 0.69 0.848021
Target:  5'- uGGCgCaGGAGGUCCAAGAAguaGCGGUa- -3'
miRNA:   3'- -CCG-GcUCUCCGGGUUUUUg--CGCCAgu -5'
10968 5' -55.4 NC_002794.1 + 113883 0.68 0.904208
Target:  5'- cGGCCGcGGcGCgCGucGGCGCGGUCu -3'
miRNA:   3'- -CCGGCuCUcCGgGUuuUUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 115733 0.73 0.663566
Target:  5'- cGGUCGGGGGGCCCuGGAucagguacgGCGCGaUCGg -3'
miRNA:   3'- -CCGGCUCUCCGGGuUUU---------UGCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 117621 0.68 0.891449
Target:  5'- cGCCGAGcgacaGGGCgCCGAccGCGCGGcCc -3'
miRNA:   3'- cCGGCUC-----UCCG-GGUUuuUGCGCCaGu -5'
10968 5' -55.4 NC_002794.1 + 120063 0.72 0.703435
Target:  5'- cGGCCGcGGAGGCC----GACGCGG-CGg -3'
miRNA:   3'- -CCGGC-UCUCCGGguuuUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 121010 0.75 0.527899
Target:  5'- uGGCCGAgggucggccucccaaGAGGCCgGAGAGCGgCGcGUCGg -3'
miRNA:   3'- -CCGGCU---------------CUCCGGgUUUUUGC-GC-CAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.