miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 192961 0.71 0.770623
Target:  5'- aGGCCGAcGAGccGUgCAGGAccaggGCGCGGUCGc -3'
miRNA:   3'- -CCGGCU-CUC--CGgGUUUU-----UGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 191720 0.68 0.891449
Target:  5'- cGuCCGAGcGGCCCAcgGACGCGa--- -3'
miRNA:   3'- cC-GGCUCuCCGGGUuuUUGCGCcagu -5'
10968 5' -55.4 NC_002794.1 + 189119 0.66 0.954254
Target:  5'- gGGCCaGGuGGUCCAAGuGCGgGGcCGc -3'
miRNA:   3'- -CCGGcUCuCCGGGUUUuUGCgCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 187847 0.72 0.713278
Target:  5'- cGCCGAGGGcucuGCCCAGccgcGCGCGGcUCGc -3'
miRNA:   3'- cCGGCUCUC----CGGGUUuu--UGCGCC-AGU- -5'
10968 5' -55.4 NC_002794.1 + 187562 0.66 0.945211
Target:  5'- cGCCGucGGGCCCGuacccgccgucGGCGCGGcCGc -3'
miRNA:   3'- cCGGCucUCCGGGUuu---------UUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 187335 0.68 0.877808
Target:  5'- aGCCG-GAGcagcaGCCCGucguuCGCGGUCAc -3'
miRNA:   3'- cCGGCuCUC-----CGGGUuuuu-GCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 185368 0.71 0.770623
Target:  5'- gGGCCGAacgccgcgagcGAGGCCagccagaagaCGAGGGCGCGGg-- -3'
miRNA:   3'- -CCGGCU-----------CUCCGG----------GUUUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 185276 0.67 0.921641
Target:  5'- cGGCCGAGuGGGCCgccGGACa-GGUCAg -3'
miRNA:   3'- -CCGGCUC-UCCGGguuUUUGcgCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 185180 0.69 0.848021
Target:  5'- cGGCgCGGucGGCgCGGucGGCGCGGUCAu -3'
miRNA:   3'- -CCG-GCUcuCCGgGUUu-UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 184482 0.66 0.946078
Target:  5'- cGGCgCGcGGGGCCCcGGAcgcccgggcgGCGCGGg-- -3'
miRNA:   3'- -CCG-GCuCUCCGGGuUUU----------UGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 183162 0.73 0.673591
Target:  5'- cGGCCGGGcuGCCCGA--GC-CGGUCGg -3'
miRNA:   3'- -CCGGCUCucCGGGUUuuUGcGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 182736 0.7 0.831964
Target:  5'- uGCCGc--GGCCCcagAAAGACGCGGUaCAg -3'
miRNA:   3'- cCGGCucuCCGGG---UUUUUGCGCCA-GU- -5'
10968 5' -55.4 NC_002794.1 + 179109 0.72 0.713278
Target:  5'- cGGUCGuccGcGGUCCGGGcGCGCGGUCGg -3'
miRNA:   3'- -CCGGCu--CuCCGGGUUUuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 178250 0.71 0.759438
Target:  5'- aGGCCGucGAGGgaagcgggcugaCCGGAGACGgGGUCGg -3'
miRNA:   3'- -CCGGCu-CUCCg-----------GGUUUUUGCgCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 154351 0.67 0.921641
Target:  5'- cGGCCGAGcu-CCC----GCGCGGUCc -3'
miRNA:   3'- -CCGGCUCuccGGGuuuuUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 151962 0.68 0.884737
Target:  5'- cGGCCccGGGugcuccucGGCCC-GGGACGUGGUCu -3'
miRNA:   3'- -CCGG--CUCu-------CCGGGuUUUUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 149657 0.7 0.815203
Target:  5'- cGCCGAgGAGGCCgagCGGGGGCGC-GUCGc -3'
miRNA:   3'- cCGGCU-CUCCGG---GUUUUUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 147578 0.71 0.779812
Target:  5'- aGGCCGAGcGGCacaCCGAGGcgcuCGCGGUg- -3'
miRNA:   3'- -CCGGCUCuCCG---GGUUUUu---GCGCCAgu -5'
10968 5' -55.4 NC_002794.1 + 147221 0.71 0.778899
Target:  5'- gGGCCGGGgcguuggcgcgauGGGCCCGAGAGCacucCGGgCAg -3'
miRNA:   3'- -CCGGCUC-------------UCCGGGUUUUUGc---GCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 146002 0.71 0.770623
Target:  5'- cGGCCGccGGGgCCGGAGACGCcGUCc -3'
miRNA:   3'- -CCGGCucUCCgGGUUUUUGCGcCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.