miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 145928 0.67 0.936995
Target:  5'- aGCgGAGGGGCCgGcGAGaGCGGUUc -3'
miRNA:   3'- cCGgCUCUCCGGgUuUUUgCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 145693 0.66 0.961548
Target:  5'- aGGUCGAgcucgaccuGAGG-CCGAAAACGgGGaUCGg -3'
miRNA:   3'- -CCGGCU---------CUCCgGGUUUUUGCgCC-AGU- -5'
10968 5' -55.4 NC_002794.1 + 145403 0.68 0.910249
Target:  5'- cGCCGcGcGGCCUuAAAGCGCGG-CGc -3'
miRNA:   3'- cCGGCuCuCCGGGuUUUUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 145341 0.76 0.504807
Target:  5'- gGGcCCGAGcGGGCCCGAgcuggGggUGUGGUCAc -3'
miRNA:   3'- -CC-GGCUC-UCCGGGUU-----UuuGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 143755 0.66 0.961548
Target:  5'- cGCCGGGGGGCuCCGcucguCGuCGGUg- -3'
miRNA:   3'- cCGGCUCUCCG-GGUuuuu-GC-GCCAgu -5'
10968 5' -55.4 NC_002794.1 + 143417 0.72 0.692541
Target:  5'- gGGCCGGGcgaAGGUCCGGAAggccagcAUGaCGGUCAc -3'
miRNA:   3'- -CCGGCUC---UCCGGGUUUU-------UGC-GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 141602 0.69 0.863318
Target:  5'- cGCCGGGcGGCUCGGcgaccggcuCGCGGUCu -3'
miRNA:   3'- cCGGCUCuCCGGGUUuuu------GCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 141441 0.71 0.742371
Target:  5'- cGCCGGGGGcGCCgGGAGcgGCGCGG-CGu -3'
miRNA:   3'- cCGGCUCUC-CGGgUUUU--UGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 140015 0.69 0.863318
Target:  5'- aGGCCGcGGAGGCCgCGGccccCGCGGgCGg -3'
miRNA:   3'- -CCGGC-UCUCCGG-GUUuuu-GCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 138750 0.71 0.742371
Target:  5'- cGGCCcuccGGGGGCCgAGucGCGgCGGUCGg -3'
miRNA:   3'- -CCGGc---UCUCCGGgUUuuUGC-GCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 135875 0.67 0.936995
Target:  5'- aGCCGAcGAGGuCCCucGGACaGCGGa-- -3'
miRNA:   3'- cCGGCU-CUCC-GGGuuUUUG-CGCCagu -5'
10968 5' -55.4 NC_002794.1 + 130324 0.66 0.940279
Target:  5'- uGGCCGAGAcggcggacgaaggcGGCgacgacgacgCCGAcGACGaCGGUCu -3'
miRNA:   3'- -CCGGCUCU--------------CCG----------GGUUuUUGC-GCCAGu -5'
10968 5' -55.4 NC_002794.1 + 130230 0.67 0.921641
Target:  5'- gGGCUccuGAGAGGCCuCGAGGAgguucUGCGGg-- -3'
miRNA:   3'- -CCGG---CUCUCCGG-GUUUUU-----GCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 129997 0.66 0.954254
Target:  5'- cGUCGAacGGCCCcGGAGCGUgcgGGUCGg -3'
miRNA:   3'- cCGGCUcuCCGGGuUUUUGCG---CCAGU- -5'
10968 5' -55.4 NC_002794.1 + 128776 0.68 0.910249
Target:  5'- gGGCCGGGuGGacuCCCGAGAGCaugaauccGCGG-CAc -3'
miRNA:   3'- -CCGGCUCuCC---GGGUUUUUG--------CGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 128077 0.7 0.806577
Target:  5'- gGGCCGAauGGCCCGAGucGGCGaCGGg-- -3'
miRNA:   3'- -CCGGCUcuCCGGGUUU--UUGC-GCCagu -5'
10968 5' -55.4 NC_002794.1 + 126604 0.66 0.95801
Target:  5'- cGCCGAGGccGGCgCCGAcguCGCGG-CGu -3'
miRNA:   3'- cCGGCUCU--CCG-GGUUuuuGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 126136 0.72 0.732755
Target:  5'- cGCCGGuuucuGGccGGCCCucuGGGACGCGGUCu -3'
miRNA:   3'- cCGGCU-----CU--CCGGGu--UUUUGCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 124407 0.68 0.904208
Target:  5'- cGGUCGucGGGGCgCCGuccgcCGCGGUCu -3'
miRNA:   3'- -CCGGCu-CUCCG-GGUuuuu-GCGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 124113 0.68 0.884737
Target:  5'- gGGCCGGGucGaCUCGAGAGCGCG-UCu -3'
miRNA:   3'- -CCGGCUCucC-GGGUUUUUGCGCcAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.