Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10968 | 5' | -55.4 | NC_002794.1 | + | 123263 | 0.68 | 0.877808 |
Target: 5'- cGCCGGcuGGUCCGGGc-CGCGGUCGu -3' miRNA: 3'- cCGGCUcuCCGGGUUUuuGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 121010 | 0.75 | 0.527899 |
Target: 5'- uGGCCGAgggucggccucccaaGAGGCCgGAGAGCGgCGcGUCGg -3' miRNA: 3'- -CCGGCU---------------CUCCGGgUUUUUGC-GC-CAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 120063 | 0.72 | 0.703435 |
Target: 5'- cGGCCGcGGAGGCC----GACGCGG-CGg -3' miRNA: 3'- -CCGGC-UCUCCGGguuuUUGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 117621 | 0.68 | 0.891449 |
Target: 5'- cGCCGAGcgacaGGGCgCCGAccGCGCGGcCc -3' miRNA: 3'- cCGGCUC-----UCCG-GGUUuuUGCGCCaGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 115733 | 0.73 | 0.663566 |
Target: 5'- cGGUCGGGGGGCCCuGGAucagguacgGCGCGaUCGg -3' miRNA: 3'- -CCGGCUCUCCGGGuUUU---------UGCGCcAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 113883 | 0.68 | 0.904208 |
Target: 5'- cGGCCGcGGcGCgCGucGGCGCGGUCu -3' miRNA: 3'- -CCGGCuCUcCGgGUuuUUGCGCCAGu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 112525 | 0.69 | 0.848021 |
Target: 5'- uGGCgCaGGAGGUCCAAGAAguaGCGGUa- -3' miRNA: 3'- -CCG-GcUCUCCGGGUUUUUg--CGCCAgu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 112164 | 0.67 | 0.936995 |
Target: 5'- -cCCGAcGAGGCUCu---GCGCGGcCAg -3' miRNA: 3'- ccGGCU-CUCCGGGuuuuUGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 111974 | 0.73 | 0.657538 |
Target: 5'- aGCCGAGcgucAGGUCCAccggcacgcccuGCGCGGUCAc -3' miRNA: 3'- cCGGCUC----UCCGGGUuuu---------UGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 110976 | 0.74 | 0.583133 |
Target: 5'- aGCCGAGcacguaguccaGGGCCgucucggucuuCAGGAACGUGGUCAg -3' miRNA: 3'- cCGGCUC-----------UCCGG-----------GUUUUUGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 110727 | 0.67 | 0.926991 |
Target: 5'- aGGUCGGGGGGUCUcuccAGAUGCuGUCGg -3' miRNA: 3'- -CCGGCUCUCCGGGuu--UUUGCGcCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 110518 | 0.68 | 0.904208 |
Target: 5'- cGGUCGAGAucGGCgUgcggGAGAACGCGG-CGa -3' miRNA: 3'- -CCGGCUCU--CCGgG----UUUUUGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 110280 | 0.72 | 0.693534 |
Target: 5'- cGGCCGccguccucGGGCCCGAGAGcCGCGGg-- -3' miRNA: 3'- -CCGGCuc------UCCGGGUUUUU-GCGCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 109956 | 0.67 | 0.926991 |
Target: 5'- gGGCCGGGGGGUCCAGcc-CGCu---- -3' miRNA: 3'- -CCGGCUCUCCGGGUUuuuGCGccagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 109740 | 0.69 | 0.863318 |
Target: 5'- -aCCGAGAGGCCCG--GACGU--UCAg -3' miRNA: 3'- ccGGCUCUCCGGGUuuUUGCGccAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 104499 | 0.67 | 0.921641 |
Target: 5'- cGGCCGGGucgggcgagaacGGGCU--GAGGCGCGGg-- -3' miRNA: 3'- -CCGGCUC------------UCCGGguUUUUGCGCCagu -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 103573 | 0.67 | 0.921641 |
Target: 5'- cGCCGu--GGCCgAcGAGCaGCGGUCGg -3' miRNA: 3'- cCGGCucuCCGGgUuUUUG-CGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 103090 | 0.68 | 0.910249 |
Target: 5'- cGUCGc--GGCCCGcgcGCGCGGUCAc -3' miRNA: 3'- cCGGCucuCCGGGUuuuUGCGCCAGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 102751 | 0.66 | 0.954254 |
Target: 5'- uGGCCGAG-GaCCCGGAcuACGUGGcCGc -3' miRNA: 3'- -CCGGCUCuCcGGGUUUu-UGCGCCaGU- -5' |
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10968 | 5' | -55.4 | NC_002794.1 | + | 102299 | 0.66 | 0.950278 |
Target: 5'- cGGCCGGGucuucGGCUCc--GACGCGcucGUCAu -3' miRNA: 3'- -CCGGCUCu----CCGGGuuuUUGCGC---CAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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