miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10968 5' -55.4 NC_002794.1 + 126604 0.66 0.95801
Target:  5'- cGCCGAGGccGGCgCCGAcguCGCGG-CGu -3'
miRNA:   3'- cCGGCUCU--CCG-GGUUuuuGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 30842 0.66 0.961548
Target:  5'- uGGUCGgcGGAGGCUUcgcguaccagguGAAGAaGCGGUCGg -3'
miRNA:   3'- -CCGGC--UCUCCGGG------------UUUUUgCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 84770 0.66 0.961548
Target:  5'- gGGCCGuccGAGGCCCG---GCcCGGcUCu -3'
miRNA:   3'- -CCGGCu--CUCCGGGUuuuUGcGCC-AGu -5'
10968 5' -55.4 NC_002794.1 + 143755 0.66 0.961548
Target:  5'- cGCCGGGGGGCuCCGcucguCGuCGGUg- -3'
miRNA:   3'- cCGGCUCUCCG-GGUuuuu-GC-GCCAgu -5'
10968 5' -55.4 NC_002794.1 + 101698 0.66 0.961548
Target:  5'- -cCCGAGccGGcGCCCGAGGACGUGuUCGu -3'
miRNA:   3'- ccGGCUC--UC-CGGGUUUUUGCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 47783 0.66 0.954254
Target:  5'- aGGUCGAGcGGCCgCAGu-ACaCGGUCu -3'
miRNA:   3'- -CCGGCUCuCCGG-GUUuuUGcGCCAGu -5'
10968 5' -55.4 NC_002794.1 + 102299 0.66 0.950278
Target:  5'- cGGCCGGGucuucGGCUCc--GACGCGcucGUCAu -3'
miRNA:   3'- -CCGGCUCu----CCGGGuuuUUGCGC---CAGU- -5'
10968 5' -55.4 NC_002794.1 + 112164 0.67 0.936995
Target:  5'- -cCCGAcGAGGCUCu---GCGCGGcCAg -3'
miRNA:   3'- ccGGCU-CUCCGGGuuuuUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 130324 0.66 0.940279
Target:  5'- uGGCCGAGAcggcggacgaaggcGGCgacgacgacgCCGAcGACGaCGGUCu -3'
miRNA:   3'- -CCGGCUCU--------------CCG----------GGUUuUUGC-GCCAGu -5'
10968 5' -55.4 NC_002794.1 + 135875 0.67 0.936995
Target:  5'- aGCCGAcGAGGuCCCucGGACaGCGGa-- -3'
miRNA:   3'- cCGGCU-CUCC-GGGuuUUUG-CGCCagu -5'
10968 5' -55.4 NC_002794.1 + 14607 0.66 0.941651
Target:  5'- cGCCGGGcaccgcgacGGGgCCGGAGACGgGGcCGg -3'
miRNA:   3'- cCGGCUC---------UCCgGGUUUUUGCgCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 187562 0.66 0.945211
Target:  5'- cGCCGucGGGCCCGuacccgccgucGGCGCGGcCGc -3'
miRNA:   3'- cCGGCucUCCGGGUuu---------UUGCGCCaGU- -5'
10968 5' -55.4 NC_002794.1 + 82452 0.66 0.941651
Target:  5'- cGGCaCGGucGGCCCGAccucGACGCcGUCGg -3'
miRNA:   3'- -CCG-GCUcuCCGGGUUu---UUGCGcCAGU- -5'
10968 5' -55.4 NC_002794.1 + 49024 0.66 0.941651
Target:  5'- cGGCCGcggcGucGUCCG---GCGCGGUCGu -3'
miRNA:   3'- -CCGGCu---CucCGGGUuuuUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 605 0.66 0.946078
Target:  5'- uGGCCGGGugcggucaggcGGCCCGGuGugGCGuUCGc -3'
miRNA:   3'- -CCGGCUCu----------CCGGGUUuUugCGCcAGU- -5'
10968 5' -55.4 NC_002794.1 + 184482 0.66 0.946078
Target:  5'- cGGCgCGcGGGGCCCcGGAcgcccgggcgGCGCGGg-- -3'
miRNA:   3'- -CCG-GCuCUCCGGGuUUU----------UGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 16384 0.66 0.950278
Target:  5'- cGGCCG---GGUCCGAAcccaaGCGGUCGu -3'
miRNA:   3'- -CCGGCucuCCGGGUUUuug--CGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 34704 0.66 0.950278
Target:  5'- cGCC-AGcAGGCCCGccggcgccacGAGGCGCGGg-- -3'
miRNA:   3'- cCGGcUC-UCCGGGU----------UUUUGCGCCagu -5'
10968 5' -55.4 NC_002794.1 + 100476 0.66 0.950278
Target:  5'- uGGCgGAGAa-CCUGGAcGACGUGGUCAu -3'
miRNA:   3'- -CCGgCUCUccGGGUUU-UUGCGCCAGU- -5'
10968 5' -55.4 NC_002794.1 + 101591 0.66 0.950278
Target:  5'- cGGCCGGGGgggcgggugccGGCCCGccGGGCGgGGg-- -3'
miRNA:   3'- -CCGGCUCU-----------CCGGGUu-UUUGCgCCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.