miRNA display CGI


Results 1 - 20 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 40572 0.66 0.915833
Target:  5'- uCgCGCCGUCcuGGCCGCgGgcccucuccuccgagUCG-UCGCCg -3'
miRNA:   3'- -GgGUGGCAG--CUGGCGgC---------------AGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 185220 0.66 0.913641
Target:  5'- gCCGCggagagucgCGcCGACCGCCGcgcaCGAgagaaagCGCCa -3'
miRNA:   3'- gGGUG---------GCaGCUGGCGGCa---GCUa------GCGG- -5'
10969 3' -58.7 NC_002794.1 + 118281 0.66 0.913641
Target:  5'- gCCGgCGUCgggGACCGCgccgggcgCGUCGcUCGUCg -3'
miRNA:   3'- gGGUgGCAG---CUGGCG--------GCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 154282 0.66 0.913641
Target:  5'- aCCGCCGgcgCGGCuCGaCgGUCGAaucgaGCCu -3'
miRNA:   3'- gGGUGGCa--GCUG-GC-GgCAGCUag---CGG- -5'
10969 3' -58.7 NC_002794.1 + 102705 0.66 0.913641
Target:  5'- aCgGCCG--GGCCGCCGgaCGGgcgCGCCa -3'
miRNA:   3'- gGgUGGCagCUGGCGGCa-GCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 49576 0.66 0.913641
Target:  5'- aCgACCgGUCGACCGgaucCCGaucgCGAUCGgCg -3'
miRNA:   3'- gGgUGG-CAGCUGGC----GGCa---GCUAGCgG- -5'
10969 3' -58.7 NC_002794.1 + 66397 0.66 0.908585
Target:  5'- cUCC-CCGUCGucCCGCCGaccgugcgaagacggCGGUUGCg -3'
miRNA:   3'- -GGGuGGCAGCu-GGCGGCa--------------GCUAGCGg -5'
10969 3' -58.7 NC_002794.1 + 32649 0.66 0.908013
Target:  5'- aCgACCGgggCGACggCGCCGUCcccGUCGUCc -3'
miRNA:   3'- gGgUGGCa--GCUG--GCGGCAGc--UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 48239 0.66 0.908013
Target:  5'- gCCAUCGuUCGGCCGCagcagGAUCaGCCc -3'
miRNA:   3'- gGGUGGC-AGCUGGCGgcag-CUAG-CGG- -5'
10969 3' -58.7 NC_002794.1 + 146281 0.66 0.908013
Target:  5'- gUCGUCGUCGACC-UCGUCG-UCGCg -3'
miRNA:   3'- gGGUGGCAGCUGGcGGCAGCuAGCGg -5'
10969 3' -58.7 NC_002794.1 + 12468 0.66 0.908013
Target:  5'- aCCUGcCCGaCGACCGUC--UGAUCGUCa -3'
miRNA:   3'- -GGGU-GGCaGCUGGCGGcaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 77300 0.66 0.908013
Target:  5'- gCUGCUGccCGACCGCCa-CGAaCGCCu -3'
miRNA:   3'- gGGUGGCa-GCUGGCGGcaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 103849 0.66 0.908013
Target:  5'- aCCACCGagcgGGCCGCCGcCGAcgagaGCg -3'
miRNA:   3'- gGGUGGCag--CUGGCGGCaGCUag---CGg -5'
10969 3' -58.7 NC_002794.1 + 63204 0.66 0.908013
Target:  5'- uCUgACCGUCGACCugcgcgaccuGCCGcCccugCGCCu -3'
miRNA:   3'- -GGgUGGCAGCUGG----------CGGCaGcua-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 123972 0.66 0.908013
Target:  5'- gCCguaCGUCGACCacGCCGU-GG-CGCCg -3'
miRNA:   3'- gGGug-GCAGCUGG--CGGCAgCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 138424 0.66 0.908013
Target:  5'- gCCgACuCGUCGAgCCGCgGUggCGGcggCGCCu -3'
miRNA:   3'- -GGgUG-GCAGCU-GGCGgCA--GCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 126558 0.66 0.908013
Target:  5'- -aCACCGUCG-CCGCgG-CGGUgcUGCUg -3'
miRNA:   3'- ggGUGGCAGCuGGCGgCaGCUA--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 39794 0.66 0.908013
Target:  5'- cCCC-CCGggCG-CCGaCCGUUuuUCGCCc -3'
miRNA:   3'- -GGGuGGCa-GCuGGC-GGCAGcuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 189025 0.66 0.908013
Target:  5'- gCCaggaGCCGcUCGACCGCCagcggCGGgcugCGCg -3'
miRNA:   3'- -GGg---UGGC-AGCUGGCGGca---GCUa---GCGg -5'
10969 3' -58.7 NC_002794.1 + 77899 0.66 0.908013
Target:  5'- aCCGCCGaaaccCGGCC-CCGUucgaccCGGUcCGCCg -3'
miRNA:   3'- gGGUGGCa----GCUGGcGGCA------GCUA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.