miRNA display CGI


Results 41 - 60 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 49576 0.66 0.913641
Target:  5'- aCgACCgGUCGACCGgaucCCGaucgCGAUCGgCg -3'
miRNA:   3'- gGgUGG-CAGCUGGC----GGCa---GCUAGCgG- -5'
10969 3' -58.7 NC_002794.1 + 102705 0.66 0.913641
Target:  5'- aCgGCCG--GGCCGCCGgaCGGgcgCGCCa -3'
miRNA:   3'- gGgUGGCagCUGGCGGCa-GCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 154282 0.66 0.913641
Target:  5'- aCCGCCGgcgCGGCuCGaCgGUCGAaucgaGCCu -3'
miRNA:   3'- gGGUGGCa--GCUG-GC-GgCAGCUag---CGG- -5'
10969 3' -58.7 NC_002794.1 + 118281 0.66 0.913641
Target:  5'- gCCGgCGUCgggGACCGCgccgggcgCGUCGcUCGUCg -3'
miRNA:   3'- gGGUgGCAG---CUGGCG--------GCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 185220 0.66 0.913641
Target:  5'- gCCGCggagagucgCGcCGACCGCCGcgcaCGAgagaaagCGCCa -3'
miRNA:   3'- gGGUG---------GCaGCUGGCGGCa---GCUa------GCGG- -5'
10969 3' -58.7 NC_002794.1 + 103849 0.66 0.908013
Target:  5'- aCCACCGagcgGGCCGCCGcCGAcgagaGCg -3'
miRNA:   3'- gGGUGGCag--CUGGCGGCaGCUag---CGg -5'
10969 3' -58.7 NC_002794.1 + 32649 0.66 0.908013
Target:  5'- aCgACCGgggCGACggCGCCGUCcccGUCGUCc -3'
miRNA:   3'- gGgUGGCa--GCUG--GCGGCAGc--UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 59419 0.66 0.902179
Target:  5'- uUCCACCGcuUCua-CGCCGacccgcaGAUCGCCg -3'
miRNA:   3'- -GGGUGGC--AGcugGCGGCag-----CUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 58415 0.66 0.902179
Target:  5'- gCCAagGUgCGGCCGCCGccaGA-CGCCg -3'
miRNA:   3'- gGGUggCA-GCUGGCGGCag-CUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 131036 0.66 0.902179
Target:  5'- -gCGCgGcCGGCUGCCGcCGAuguUCGUCg -3'
miRNA:   3'- ggGUGgCaGCUGGCGGCaGCU---AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 71328 0.66 0.902179
Target:  5'- gCCACC-UCGGCgGCgaUGUCGucCGCCa -3'
miRNA:   3'- gGGUGGcAGCUGgCG--GCAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 152578 0.66 0.902179
Target:  5'- aCCGCCGcggCGGCCGCCacGUCccugcggCGCg -3'
miRNA:   3'- gGGUGGCa--GCUGGCGG--CAGcua----GCGg -5'
10969 3' -58.7 NC_002794.1 + 193937 0.66 0.902179
Target:  5'- aCCGCCGgcucCGGCC-CCGcCGccacCGCCg -3'
miRNA:   3'- gGGUGGCa---GCUGGcGGCaGCua--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 14228 0.66 0.904537
Target:  5'- aCCCGCCGaCGAcagaggagacggagaCCGCCGgcUCGAcccCGaCCg -3'
miRNA:   3'- -GGGUGGCaGCU---------------GGCGGC--AGCUa--GC-GG- -5'
10969 3' -58.7 NC_002794.1 + 121503 0.66 0.902179
Target:  5'- cUCCGCCGgggCGACgaCGuCCGaaccggCGGUCGUCu -3'
miRNA:   3'- -GGGUGGCa--GCUG--GC-GGCa-----GCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 77899 0.66 0.908013
Target:  5'- aCCGCCGaaaccCGGCC-CCGUucgaccCGGUcCGCCg -3'
miRNA:   3'- gGGUGGCa----GCUGGcGGCA------GCUA-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 77300 0.66 0.908013
Target:  5'- gCUGCUGccCGACCGCCa-CGAaCGCCu -3'
miRNA:   3'- gGGUGGCa-GCUGGCGGcaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 12468 0.66 0.908013
Target:  5'- aCCUGcCCGaCGACCGUC--UGAUCGUCa -3'
miRNA:   3'- -GGGU-GGCaGCUGGCGGcaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 146281 0.66 0.908013
Target:  5'- gUCGUCGUCGACC-UCGUCG-UCGCg -3'
miRNA:   3'- gGGUGGCAGCUGGcGGCAGCuAGCGg -5'
10969 3' -58.7 NC_002794.1 + 48239 0.66 0.908013
Target:  5'- gCCAUCGuUCGGCCGCagcagGAUCaGCCc -3'
miRNA:   3'- gGGUGGC-AGCUGGCGgcag-CUAG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.