miRNA display CGI


Results 1 - 20 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 187577 0.89 0.062905
Target:  5'- aCCCGCCGUCGgcgcgGCCGCCGUCGcgacgcccggcGUCGCCc -3'
miRNA:   3'- -GGGUGGCAGC-----UGGCGGCAGC-----------UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 52911 0.87 0.091647
Target:  5'- gCCGCCGUCGccGCCGCCGUCGcUCgGCCg -3'
miRNA:   3'- gGGUGGCAGC--UGGCGGCAGCuAG-CGG- -5'
10969 3' -58.7 NC_002794.1 + 186369 0.85 0.11733
Target:  5'- gCCGCCGcCG-CCGCCGUCG-UCGCCg -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 61513 0.84 0.129376
Target:  5'- gCCCGCCGgacggCGGCCGCCGgCGGcCGCCg -3'
miRNA:   3'- -GGGUGGCa----GCUGGCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 28696 0.83 0.156952
Target:  5'- gCCGCCGUUGcugcuGCUGCCGUCG-UCGCCg -3'
miRNA:   3'- gGGUGGCAGC-----UGGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 72906 0.83 0.160751
Target:  5'- gCCACCGUCGcgcucgccGCCGCCGUCGGa-GCCg -3'
miRNA:   3'- gGGUGGCAGC--------UGGCGGCAGCUagCGG- -5'
10969 3' -58.7 NC_002794.1 + 111626 0.83 0.164633
Target:  5'- gCCGCCG-CGGCCGCCGccggUCGggCGCCg -3'
miRNA:   3'- gGGUGGCaGCUGGCGGC----AGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 183890 0.82 0.1686
Target:  5'- gCCGCCGUC-ACCGCCGcCGA-CGCCa -3'
miRNA:   3'- gGGUGGCAGcUGGCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 107270 0.82 0.1686
Target:  5'- gCCgCGCCGUCcGCCGCCGUCGccccGUCGUCg -3'
miRNA:   3'- -GG-GUGGCAGcUGGCGGCAGC----UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 29210 0.82 0.172651
Target:  5'- uCCgGCgGUCGGCgGCCGUCGGcCGCCg -3'
miRNA:   3'- -GGgUGgCAGCUGgCGGCAGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 189898 0.82 0.18533
Target:  5'- gCCCGCCGUCagcGCCGCCGcgCGAcCGCCc -3'
miRNA:   3'- -GGGUGGCAGc--UGGCGGCa-GCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 121441 0.81 0.194234
Target:  5'- aCCACCGagaccaCGGCCGCCGUCgGGUCGaCCg -3'
miRNA:   3'- gGGUGGCa-----GCUGGCGGCAG-CUAGC-GG- -5'
10969 3' -58.7 NC_002794.1 + 47410 0.81 0.194234
Target:  5'- gCCGCCGUCGG-CGCCGUCGcgcggagCGCCa -3'
miRNA:   3'- gGGUGGCAGCUgGCGGCAGCua-----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 194041 0.81 0.213167
Target:  5'- gCCCGCCGcCGccgccGCCGCCGcCGAgagCGCCg -3'
miRNA:   3'- -GGGUGGCaGC-----UGGCGGCaGCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 77938 0.81 0.218141
Target:  5'- aCCCGCCGgaggcgccgCGAUCGCCGcCG-UCGCCg -3'
miRNA:   3'- -GGGUGGCa--------GCUGGCGGCaGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16678 0.81 0.220159
Target:  5'- aCCCGCC-UCGGCCGCCaagucucgcucgcgaGUCGcUCGCCg -3'
miRNA:   3'- -GGGUGGcAGCUGGCGG---------------CAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16582 0.8 0.24452
Target:  5'- aCCACCGcCG-CCGCCGUCuccggcGUCGCCa -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAGc-----UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 187743 0.8 0.24452
Target:  5'- -gCACCGUCGccaucuccgaacGCCGCCGgcgcCGGUCGCCu -3'
miRNA:   3'- ggGUGGCAGC------------UGGCGGCa---GCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 134186 0.8 0.24954
Target:  5'- gCCACCucguaUCGGCUgguggggGCCGUCGGUCGCCa -3'
miRNA:   3'- gGGUGGc----AGCUGG-------CGGCAGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16501 0.79 0.261586
Target:  5'- gCCACCGcCG-CCGCCGUCcccggcGUCGCCa -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAGc-----UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.