miRNA display CGI


Results 21 - 40 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 64294 0.79 0.267486
Target:  5'- gCCCACCG-CGGCC-CCGUCGugcucCGCCa -3'
miRNA:   3'- -GGGUGGCaGCUGGcGGCAGCua---GCGG- -5'
10969 3' -58.7 NC_002794.1 + 181534 0.79 0.267486
Target:  5'- gCCCGCCGcCGGCgGgCCGgcgcucUCGGUCGCCg -3'
miRNA:   3'- -GGGUGGCaGCUGgC-GGC------AGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 67838 0.79 0.285833
Target:  5'- gCCCGCCGUCGcccggcGCCGCCGcgCGucacccggCGCCa -3'
miRNA:   3'- -GGGUGGCAGC------UGGCGGCa-GCua------GCGG- -5'
10969 3' -58.7 NC_002794.1 + 49466 0.78 0.292165
Target:  5'- gCCGCCGUgacCGGCCGCCGcgggucugUCGAccucgUCGCCg -3'
miRNA:   3'- gGGUGGCA---GCUGGCGGC--------AGCU-----AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 23989 0.78 0.297957
Target:  5'- gCCACCGUCGcuccguccgacggGCCGCCGUCaccgcggCGCCu -3'
miRNA:   3'- gGGUGGCAGC-------------UGGCGGCAGcua----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 193387 0.78 0.298606
Target:  5'- cCUCGCCGUCGuCCGCCucgCGcUCGCCu -3'
miRNA:   3'- -GGGUGGCAGCuGGCGGca-GCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 187535 0.78 0.298606
Target:  5'- cCCCGCCGccgCGACCGCCGcCac-CGCCg -3'
miRNA:   3'- -GGGUGGCa--GCUGGCGGCaGcuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 145429 0.78 0.30056
Target:  5'- gCCGCCGUCGGCUcacgagcucgcgaGCCGgcggacagauggagCGGUCGCCg -3'
miRNA:   3'- gGGUGGCAGCUGG-------------CGGCa-------------GCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 66012 0.78 0.305157
Target:  5'- -gCACCGaggCGGCCGCgGUCG-UCGCCg -3'
miRNA:   3'- ggGUGGCa--GCUGGCGgCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 56567 0.78 0.311818
Target:  5'- cCCCGCCGcCGACCGCCcgcgccgCGG-CGCCc -3'
miRNA:   3'- -GGGUGGCaGCUGGCGGca-----GCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 46119 0.78 0.316545
Target:  5'- cCCCGCCcgcGUCGGCucccccguccgaguCGgCGUCGAUCGCCc -3'
miRNA:   3'- -GGGUGG---CAGCUG--------------GCgGCAGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 63485 0.78 0.318588
Target:  5'- gCCGCCGUCGACgaCGCCG-CGGcgUCGUCg -3'
miRNA:   3'- gGGUGGCAGCUG--GCGGCaGCU--AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 105730 0.78 0.318588
Target:  5'- gCgGCCGUCGGgaaagcgucgUCGCCGUCG-UCGCCg -3'
miRNA:   3'- gGgUGGCAGCU----------GGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 118194 0.78 0.318588
Target:  5'- aCCUuCCGUCGccGCCGCCGUCGccUCGCg -3'
miRNA:   3'- -GGGuGGCAGC--UGGCGGCAGCu-AGCGg -5'
10969 3' -58.7 NC_002794.1 + 16915 0.78 0.325468
Target:  5'- aUCCgaGCCGcCGACUGUCGUCGG-CGCCg -3'
miRNA:   3'- -GGG--UGGCaGCUGGCGGCAGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 187444 0.77 0.332458
Target:  5'- gCCgCGCCGUCuGCCGCCGcUCGGcgUCGCUc -3'
miRNA:   3'- -GG-GUGGCAGcUGGCGGC-AGCU--AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 105699 0.77 0.332458
Target:  5'- aCCGCCGUCGccuCCGCuCGaggCGAUCGCg -3'
miRNA:   3'- gGGUGGCAGCu--GGCG-GCa--GCUAGCGg -5'
10969 3' -58.7 NC_002794.1 + 104407 0.77 0.339558
Target:  5'- gUCCGCCGcggccucggccUCGGCCGCCGgccCGGaCGCCg -3'
miRNA:   3'- -GGGUGGC-----------AGCUGGCGGCa--GCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 193970 0.77 0.339558
Target:  5'- aCCGCCGUC-ACCGCCG-CGGcCGCUa -3'
miRNA:   3'- gGGUGGCAGcUGGCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 115304 0.77 0.339558
Target:  5'- aCCGCUG-CG-CCGCCGUCcgcacGGUCGCCg -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAG-----CUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.