miRNA display CGI


Results 41 - 60 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 115304 0.77 0.339558
Target:  5'- aCCGCUG-CG-CCGCCGUCcgcacGGUCGCCg -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAG-----CUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 17642 0.77 0.354084
Target:  5'- uCCCGCCGccgCGGCCGCCGcCac-CGCCg -3'
miRNA:   3'- -GGGUGGCa--GCUGGCGGCaGcuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 61555 0.77 0.354084
Target:  5'- gCCGCCGcggcggCGGCCGCCGUCGAaCaCCu -3'
miRNA:   3'- gGGUGGCa-----GCUGGCGGCAGCUaGcGG- -5'
10969 3' -58.7 NC_002794.1 + 34078 0.77 0.354084
Target:  5'- uCCCGCCGgCGGCCgggcaGCCGUCGggCgGCCc -3'
miRNA:   3'- -GGGUGGCaGCUGG-----CGGCAGCuaG-CGG- -5'
10969 3' -58.7 NC_002794.1 + 120849 0.77 0.354084
Target:  5'- uCCCugCG-CGGCCGUCGUCcagCGCCu -3'
miRNA:   3'- -GGGugGCaGCUGGCGGCAGcuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 131280 0.77 0.36151
Target:  5'- aCCACCGcCGG-CGCCGUCGcucCGCCg -3'
miRNA:   3'- gGGUGGCaGCUgGCGGCAGCua-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 129017 0.77 0.369044
Target:  5'- gCUCACCGUCG-CCGCCGUC--UCGgCg -3'
miRNA:   3'- -GGGUGGCAGCuGGCGGCAGcuAGCgG- -5'
10969 3' -58.7 NC_002794.1 + 146318 0.76 0.375916
Target:  5'- gCUCGCCGacgcgcggcggauUCGAccCCGUCGUCGAUCGCg -3'
miRNA:   3'- -GGGUGGC-------------AGCU--GGCGGCAGCUAGCGg -5'
10969 3' -58.7 NC_002794.1 + 69721 0.76 0.376685
Target:  5'- -gCACCGUCGAgUGCCGcCGGagCGCCa -3'
miRNA:   3'- ggGUGGCAGCUgGCGGCaGCUa-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 31399 0.76 0.392282
Target:  5'- cCCCGCCG-CGcCCGCCG-CGccCGCCg -3'
miRNA:   3'- -GGGUGGCaGCuGGCGGCaGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 134614 0.76 0.400238
Target:  5'- uCCCGCCGagUUGACCGCCaUCGccUGCCg -3'
miRNA:   3'- -GGGUGGC--AGCUGGCGGcAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 112830 0.76 0.400238
Target:  5'- gCCGCCGaguaCGGCUGCuCGUCGGcgCGCCg -3'
miRNA:   3'- gGGUGGCa---GCUGGCG-GCAGCUa-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 11814 0.76 0.408295
Target:  5'- gCCGCCGUCG-CCGCCuUCGcucccccccUCGCCg -3'
miRNA:   3'- gGGUGGCAGCuGGCGGcAGCu--------AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 185335 0.76 0.408295
Target:  5'- aCCCG-CGUCGACCGC--UCGcgCGCCg -3'
miRNA:   3'- -GGGUgGCAGCUGGCGgcAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 69127 0.76 0.408295
Target:  5'- uCUCGCCGcCGACCGCCGgccaagcCGcuUCGCCc -3'
miRNA:   3'- -GGGUGGCaGCUGGCGGCa------GCu-AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 124277 0.76 0.408295
Target:  5'- gCCGCCG-CG-CCGuCCGUCG-UCGCCc -3'
miRNA:   3'- gGGUGGCaGCuGGC-GGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 137145 0.75 0.416452
Target:  5'- gCCCGCCcgGcCGGCCGCCcUCGGUCccgGCCg -3'
miRNA:   3'- -GGGUGG--CaGCUGGCGGcAGCUAG---CGG- -5'
10969 3' -58.7 NC_002794.1 + 26095 0.75 0.441511
Target:  5'- -gCGCCGaCGGCC-CCGgCGAUCGCCg -3'
miRNA:   3'- ggGUGGCaGCUGGcGGCaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 62578 0.75 0.450052
Target:  5'- aCCCAgCGcCG-CCGCCGcCGA-CGCCa -3'
miRNA:   3'- -GGGUgGCaGCuGGCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 21956 0.75 0.450052
Target:  5'- --gGCCGUCGGCCgcucccgcggcGCCGUCGucuccgcgacccGUCGCCg -3'
miRNA:   3'- gggUGGCAGCUGG-----------CGGCAGC------------UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.