miRNA display CGI


Results 21 - 40 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 123972 0.66 0.908013
Target:  5'- gCCguaCGUCGACCacGCCGU-GG-CGCCg -3'
miRNA:   3'- gGGug-GCAGCUGG--CGGCAgCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 14228 0.66 0.904537
Target:  5'- aCCCGCCGaCGAcagaggagacggagaCCGCCGgcUCGAcccCGaCCg -3'
miRNA:   3'- -GGGUGGCaGCU---------------GGCGGC--AGCUa--GC-GG- -5'
10969 3' -58.7 NC_002794.1 + 37387 0.66 0.902179
Target:  5'- --gGCCGUCGAagUCGCUGUaGAgCGCCc -3'
miRNA:   3'- gggUGGCAGCU--GGCGGCAgCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 45942 0.66 0.902179
Target:  5'- cCCCGCCcggUGACCGUCucUCGggCGCg -3'
miRNA:   3'- -GGGUGGca-GCUGGCGGc-AGCuaGCGg -5'
10969 3' -58.7 NC_002794.1 + 49225 0.66 0.902179
Target:  5'- gCCgCGCCGcCaACaggGCCGUCGAcgggCGCCc -3'
miRNA:   3'- -GG-GUGGCaGcUGg--CGGCAGCUa---GCGG- -5'
10969 3' -58.7 NC_002794.1 + 59419 0.66 0.902179
Target:  5'- uUCCACCGcuUCua-CGCCGacccgcaGAUCGCCg -3'
miRNA:   3'- -GGGUGGC--AGcugGCGGCag-----CUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 58415 0.66 0.902179
Target:  5'- gCCAagGUgCGGCCGCCGccaGA-CGCCg -3'
miRNA:   3'- gGGUggCA-GCUGGCGGCag-CUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 131036 0.66 0.902179
Target:  5'- -gCGCgGcCGGCUGCCGcCGAuguUCGUCg -3'
miRNA:   3'- ggGUGgCaGCUGGCGGCaGCU---AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 71328 0.66 0.902179
Target:  5'- gCCACC-UCGGCgGCgaUGUCGucCGCCa -3'
miRNA:   3'- gGGUGGcAGCUGgCG--GCAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 152578 0.66 0.902179
Target:  5'- aCCGCCGcggCGGCCGCCacGUCccugcggCGCg -3'
miRNA:   3'- gGGUGGCa--GCUGGCGG--CAGcua----GCGg -5'
10969 3' -58.7 NC_002794.1 + 193937 0.66 0.902179
Target:  5'- aCCGCCGgcucCGGCC-CCGcCGccacCGCCg -3'
miRNA:   3'- gGGUGGCa---GCUGGcGGCaGCua--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 121503 0.66 0.902179
Target:  5'- cUCCGCCGgggCGACgaCGuCCGaaccggCGGUCGUCu -3'
miRNA:   3'- -GGGUGGCa--GCUG--GC-GGCa-----GCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 121985 0.66 0.900987
Target:  5'- uCCCGCCGagcgCGGCCGggagcuguuccaCGUCGucuucuucggCGCCg -3'
miRNA:   3'- -GGGUGGCa---GCUGGCg-----------GCAGCua--------GCGG- -5'
10969 3' -58.7 NC_002794.1 + 18255 0.66 0.896138
Target:  5'- gCCgACCGgCGACCGCgagaugCG-CGG-CGCCg -3'
miRNA:   3'- -GGgUGGCaGCUGGCG------GCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 63054 0.66 0.896138
Target:  5'- uCUCACCGUCcACCGCgG-CGAgcuccuggGCCg -3'
miRNA:   3'- -GGGUGGCAGcUGGCGgCaGCUag------CGG- -5'
10969 3' -58.7 NC_002794.1 + 193595 0.66 0.896138
Target:  5'- gCUCACCGUCGuguagcguACCGCgG-CGccGUgGCCa -3'
miRNA:   3'- -GGGUGGCAGC--------UGGCGgCaGC--UAgCGG- -5'
10969 3' -58.7 NC_002794.1 + 57609 0.66 0.896138
Target:  5'- gCCACCGagaaGGCgGCCGaCGAccUgGCCg -3'
miRNA:   3'- gGGUGGCag--CUGgCGGCaGCU--AgCGG- -5'
10969 3' -58.7 NC_002794.1 + 116214 0.66 0.896138
Target:  5'- aCgGCC-UCGGCCGCgcggcucgaGUCGAUgccCGCCg -3'
miRNA:   3'- gGgUGGcAGCUGGCGg--------CAGCUA---GCGG- -5'
10969 3' -58.7 NC_002794.1 + 21383 0.66 0.894906
Target:  5'- gCCGCCGUCucuuccucggacACCGCCGgcuccaCGAUCucgaGCCc -3'
miRNA:   3'- gGGUGGCAGc-----------UGGCGGCa-----GCUAG----CGG- -5'
10969 3' -58.7 NC_002794.1 + 117796 0.66 0.890529
Target:  5'- gUCCGCCGcacguucagcagcagCGACUGCuuCGUCaGGUCGCa -3'
miRNA:   3'- -GGGUGGCa--------------GCUGGCG--GCAG-CUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.