miRNA display CGI


Results 41 - 60 of 408 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 18661 0.66 0.889895
Target:  5'- aCgACCGUCG-CCGCUuccUCGGcUGCCg -3'
miRNA:   3'- gGgUGGCAGCuGGCGGc--AGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 190541 0.66 0.889895
Target:  5'- gUCCACCaG-CGGuCCG-CGUCcGUCGCCg -3'
miRNA:   3'- -GGGUGG-CaGCU-GGCgGCAGcUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 83974 0.66 0.889895
Target:  5'- -gCGCC-UgGACCGCCG-CGAacacCGCCa -3'
miRNA:   3'- ggGUGGcAgCUGGCGGCaGCUa---GCGG- -5'
10969 3' -58.7 NC_002794.1 + 58833 0.66 0.889895
Target:  5'- gCCUGCCGcgCGAggaCGCCGaCGugcagcucGUCGCCg -3'
miRNA:   3'- -GGGUGGCa-GCUg--GCGGCaGC--------UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 27612 0.66 0.889895
Target:  5'- gUCCACCcgGUCgGACgGCCGgUCGGUCaaGCg -3'
miRNA:   3'- -GGGUGG--CAG-CUGgCGGC-AGCUAG--CGg -5'
10969 3' -58.7 NC_002794.1 + 191804 0.66 0.889895
Target:  5'- aCCGcCCGcUCGGCCGCuCGagGAcCGCg -3'
miRNA:   3'- gGGU-GGC-AGCUGGCG-GCagCUaGCGg -5'
10969 3' -58.7 NC_002794.1 + 195007 0.66 0.889895
Target:  5'- cCCUGCCGggCGAacuccUCGaaGUCGcgCGCCg -3'
miRNA:   3'- -GGGUGGCa-GCU-----GGCggCAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 181918 0.66 0.889895
Target:  5'- aCCACCcgcgCGACgGCCGUCucccgggaGCCg -3'
miRNA:   3'- gGGUGGca--GCUGgCGGCAGcuag----CGG- -5'
10969 3' -58.7 NC_002794.1 + 184538 0.66 0.889895
Target:  5'- -aCGCCGcCcACCGCCGccucuUCGGaCGCCu -3'
miRNA:   3'- ggGUGGCaGcUGGCGGC-----AGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 185169 0.66 0.889895
Target:  5'- cUCCGCCGgcgCGG-CGCgGUCGG-CGCg -3'
miRNA:   3'- -GGGUGGCa--GCUgGCGgCAGCUaGCGg -5'
10969 3' -58.7 NC_002794.1 + 143741 0.66 0.889895
Target:  5'- nCCGCCGgacgCG-CCGCCGgggggcuccgcUCG-UCGUCg -3'
miRNA:   3'- gGGUGGCa---GCuGGCGGC-----------AGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 12217 0.66 0.883453
Target:  5'- gCCgGCggCGUCGGCggCGCCGgCGG-CGCCg -3'
miRNA:   3'- -GGgUG--GCAGCUG--GCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 24094 0.66 0.883453
Target:  5'- gUCGCCGUauuaaaGACCGCgacCGAUCGUCc -3'
miRNA:   3'- gGGUGGCAg-----CUGGCGgcaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 69255 0.66 0.883453
Target:  5'- gCCCGCucgcgcuccguaCGUuccCGGuCCGCCGcCGAaCGCCg -3'
miRNA:   3'- -GGGUG------------GCA---GCU-GGCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 128850 0.66 0.883453
Target:  5'- gCCGgCGUCGacgacgccgcuGCCGCCGU-GAcccuUUGCCg -3'
miRNA:   3'- gGGUgGCAGC-----------UGGCGGCAgCU----AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 149264 0.66 0.883453
Target:  5'- aCCACCcUCGuccCCGCCGgCGG-CGCg -3'
miRNA:   3'- gGGUGGcAGCu--GGCGGCaGCUaGCGg -5'
10969 3' -58.7 NC_002794.1 + 188299 0.66 0.883453
Target:  5'- gCgCGCCGgaccCGGcCCGUCGUCG-UCGUCc -3'
miRNA:   3'- -GgGUGGCa---GCU-GGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 142127 0.66 0.883453
Target:  5'- aCCCGgCGgcCGACCGCCGggucacggCGGagGCg -3'
miRNA:   3'- -GGGUgGCa-GCUGGCGGCa-------GCUagCGg -5'
10969 3' -58.7 NC_002794.1 + 40330 0.66 0.883453
Target:  5'- aCCCGCCGcgCgGACgCGCCaccggCGG-CGCCg -3'
miRNA:   3'- -GGGUGGCa-G-CUG-GCGGca---GCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 121198 0.66 0.882798
Target:  5'- aUCCGaucggggucgacuUCGggggCGGCCGCCGcCGcuacaGUCGCCg -3'
miRNA:   3'- -GGGU-------------GGCa---GCUGGCGGCaGC-----UAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.