miRNA display CGI


Results 61 - 80 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 13124 0.66 0.882798
Target:  5'- gUCGCCGcgCGGCuCGCUcgcgcggGUCG-UCGCCg -3'
miRNA:   3'- gGGUGGCa-GCUG-GCGG-------CAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 152198 0.66 0.881482
Target:  5'- -aCACgGUCGcguuCCGCCcggaggcgucggacGUCGcgCGCCa -3'
miRNA:   3'- ggGUGgCAGCu---GGCGG--------------CAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 113367 0.67 0.876814
Target:  5'- uCCCGgaaCGggugCgGGCCGCCGUCGugcaggCGCUg -3'
miRNA:   3'- -GGGUg--GCa---G-CUGGCGGCAGCua----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 140516 0.67 0.876814
Target:  5'- uUCCACCGcuggCGGCagGCCcUCGGgcaacaaaUCGCCg -3'
miRNA:   3'- -GGGUGGCa---GCUGg-CGGcAGCU--------AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 34952 0.67 0.876814
Target:  5'- gCCCGCCG-CGACCcgcgccucCCGUCccUgGCCa -3'
miRNA:   3'- -GGGUGGCaGCUGGc-------GGCAGcuAgCGG- -5'
10969 3' -58.7 NC_002794.1 + 37549 0.67 0.876814
Target:  5'- gCCGCCGgaggggccaCGACCgcgucuccgaGCCGUCGAacagauagcggUCGCg -3'
miRNA:   3'- gGGUGGCa--------GCUGG----------CGGCAGCU-----------AGCGg -5'
10969 3' -58.7 NC_002794.1 + 113528 0.67 0.876814
Target:  5'- cUCCGCCGgcUCGGCguCGCCGgccCGGagcaggCGCCg -3'
miRNA:   3'- -GGGUGGC--AGCUG--GCGGCa--GCUa-----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 180839 0.67 0.876814
Target:  5'- gCCCGgCGUC-ACCGUCGUcuaCGGccUCGUCg -3'
miRNA:   3'- -GGGUgGCAGcUGGCGGCA---GCU--AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 183199 0.67 0.876814
Target:  5'- gCCGCCacGcCGGCgGCgCGUUcGUCGCCa -3'
miRNA:   3'- gGGUGG--CaGCUGgCG-GCAGcUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 82318 0.67 0.869982
Target:  5'- cUCCACCGcacacCCGCCGugaccuUCGAgCGCCa -3'
miRNA:   3'- -GGGUGGCagcu-GGCGGC------AGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 82553 0.67 0.869982
Target:  5'- gCCCucCCGcCGGCCcaGCCGgCGAggccgaCGCCg -3'
miRNA:   3'- -GGGu-GGCaGCUGG--CGGCaGCUa-----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 83580 0.67 0.869982
Target:  5'- aCCCACCaccacucCGACC-CCGUCGcgCuCCg -3'
miRNA:   3'- -GGGUGGca-----GCUGGcGGCAGCuaGcGG- -5'
10969 3' -58.7 NC_002794.1 + 89587 0.67 0.869982
Target:  5'- aUCgGCCGUCGAgCCGCg--CGAUC-CCg -3'
miRNA:   3'- -GGgUGGCAGCU-GGCGgcaGCUAGcGG- -5'
10969 3' -58.7 NC_002794.1 + 192439 0.67 0.869982
Target:  5'- gCCgGCgCGUCG-CgCGCCucgcaGUCGcgCGCCa -3'
miRNA:   3'- -GGgUG-GCAGCuG-GCGG-----CAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 127082 0.67 0.869982
Target:  5'- gCCCGCCG--GACCgGCUGgagagCGGcggcUCGCCg -3'
miRNA:   3'- -GGGUGGCagCUGG-CGGCa----GCU----AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 104771 0.67 0.869982
Target:  5'- gCCCGCCGgcgcucCGACaCGCCGacaggCGGU-GCUg -3'
miRNA:   3'- -GGGUGGCa-----GCUG-GCGGCa----GCUAgCGG- -5'
10969 3' -58.7 NC_002794.1 + 43888 0.67 0.869982
Target:  5'- aCCCgGCCGUCG-CCGgCGUC--UCGUg -3'
miRNA:   3'- -GGG-UGGCAGCuGGCgGCAGcuAGCGg -5'
10969 3' -58.7 NC_002794.1 + 110259 0.67 0.868594
Target:  5'- uCCCGCgCGgcgucgcgacggCGGCCGCCGUCcucggGCCc -3'
miRNA:   3'- -GGGUG-GCa-----------GCUGGCGGCAGcuag-CGG- -5'
10969 3' -58.7 NC_002794.1 + 17454 0.67 0.865793
Target:  5'- gCCCGCgaccgagGUCGAagguucgcuccacaCGCCGcguuugCGAUCGCCg -3'
miRNA:   3'- -GGGUGg------CAGCUg-------------GCGGCa-----GCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 17211 0.67 0.862963
Target:  5'- aCCGCCGcCGccaccACCGCCGcCac-CGCCg -3'
miRNA:   3'- gGGUGGCaGC-----UGGCGGCaGcuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.