miRNA display CGI


Results 1 - 20 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 247 0.71 0.673385
Target:  5'- aCCCACCccgGACUGCCGcCGcgCGCg -3'
miRNA:   3'- -GGGUGGcagCUGGCGGCaGCuaGCGg -5'
10969 3' -58.7 NC_002794.1 + 2613 0.7 0.692403
Target:  5'- aCCUACC--CGGCCGCCGgCGcgCGUCc -3'
miRNA:   3'- -GGGUGGcaGCUGGCGGCaGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 10302 0.74 0.493153
Target:  5'- cCCCGucggcgagagacuCCGacgacUCGGCCGUCGUCGG-CGCCg -3'
miRNA:   3'- -GGGU-------------GGC-----AGCUGGCGGCAGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 11539 0.7 0.720579
Target:  5'- gCgACCGagGACCGCgGcUGGUCGCUa -3'
miRNA:   3'- gGgUGGCagCUGGCGgCaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 11814 0.76 0.408295
Target:  5'- gCCGCCGUCG-CCGCCuUCGcucccccccUCGCCg -3'
miRNA:   3'- gGGUGGCAGCuGGCGGcAGCu--------AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 11857 0.7 0.742696
Target:  5'- aCCGCCGgcgaCGACCGCcCGccccgcgacggguccUCGAgcggguucgugcUCGCCg -3'
miRNA:   3'- gGGUGGCa---GCUGGCG-GC---------------AGCU------------AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 12179 0.73 0.56812
Target:  5'- gCCGCCGaCG-CCGCCGcggcCGggCGCCg -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCa---GCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 12217 0.66 0.883453
Target:  5'- gCCgGCggCGUCGGCggCGCCGgCGG-CGCCg -3'
miRNA:   3'- -GGgUG--GCAGCUG--GCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 12468 0.66 0.908013
Target:  5'- aCCUGcCCGaCGACCGUC--UGAUCGUCa -3'
miRNA:   3'- -GGGU-GGCaGCUGGCGGcaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 13124 0.66 0.882798
Target:  5'- gUCGCCGcgCGGCuCGCUcgcgcggGUCG-UCGCCg -3'
miRNA:   3'- gGGUGGCa-GCUG-GCGG-------CAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 13258 0.68 0.805687
Target:  5'- cCUCGCCGggcugugguggagCGGCCGCUGUUGA-CGgCg -3'
miRNA:   3'- -GGGUGGCa------------GCUGGCGGCAGCUaGCgG- -5'
10969 3' -58.7 NC_002794.1 + 13848 0.72 0.629287
Target:  5'- cCCCACCGccUCGucGCCGCCGccgCGAcccgguucuccgagCGCCg -3'
miRNA:   3'- -GGGUGGC--AGC--UGGCGGCa--GCUa-------------GCGG- -5'
10969 3' -58.7 NC_002794.1 + 13946 0.68 0.812292
Target:  5'- aCCACCGuUCGugCG-UGUCGAgccgcucggagacguUCGCUg -3'
miRNA:   3'- gGGUGGC-AGCugGCgGCAGCU---------------AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 14141 0.73 0.530617
Target:  5'- -gUACCGUcCGGuCCGUCGUCGAgcccCGCCg -3'
miRNA:   3'- ggGUGGCA-GCU-GGCGGCAGCUa---GCGG- -5'
10969 3' -58.7 NC_002794.1 + 14228 0.66 0.904537
Target:  5'- aCCCGCCGaCGAcagaggagacggagaCCGCCGgcUCGAcccCGaCCg -3'
miRNA:   3'- -GGGUGGCaGCU---------------GGCGGC--AGCUa--GC-GG- -5'
10969 3' -58.7 NC_002794.1 + 14452 0.69 0.757175
Target:  5'- cUCCGCgGgCGACCG-UGUCGAgcggcgCGCCg -3'
miRNA:   3'- -GGGUGgCaGCUGGCgGCAGCUa-----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 14551 0.7 0.739041
Target:  5'- gCCC-CCGUCGACgCGCgGgaggCGAgccgGCCg -3'
miRNA:   3'- -GGGuGGCAGCUG-GCGgCa---GCUag--CGG- -5'
10969 3' -58.7 NC_002794.1 + 14759 0.67 0.85576
Target:  5'- gCCCgaaGCCGUCGagGCCGCUGaggccggCGAg-GCCg -3'
miRNA:   3'- -GGG---UGGCAGC--UGGCGGCa------GCUagCGG- -5'
10969 3' -58.7 NC_002794.1 + 15113 0.68 0.825222
Target:  5'- aCgCGCCGgagacCGACCGCCGUguucuacgUGAauUCGCUc -3'
miRNA:   3'- -GgGUGGCa----GCUGGCGGCA--------GCU--AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 15398 0.67 0.840825
Target:  5'- aCCACaCGcaccUGGCCGCCaUCGAgUGCCa -3'
miRNA:   3'- gGGUG-GCa---GCUGGCGGcAGCUaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.