miRNA display CGI


Results 21 - 40 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 16501 0.79 0.261586
Target:  5'- gCCACCGcCG-CCGCCGUCcccggcGUCGCCa -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAGc-----UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16531 0.71 0.682913
Target:  5'- aCCGCCGUCc-CCGgCGUCcccggcGUCGCCa -3'
miRNA:   3'- gGGUGGCAGcuGGCgGCAGc-----UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16582 0.8 0.24452
Target:  5'- aCCACCGcCG-CCGCCGUCuccggcGUCGCCa -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAGc-----UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16678 0.81 0.220159
Target:  5'- aCCCGCC-UCGGCCGCCaagucucgcucgcgaGUCGcUCGCCg -3'
miRNA:   3'- -GGGUGGcAGCUGGCGG---------------CAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16758 0.7 0.729847
Target:  5'- cCCCACCGaaaaUCGGCacgaacggcacgCGCCGaCGccaaAUCGCCg -3'
miRNA:   3'- -GGGUGGC----AGCUG------------GCGGCaGC----UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 16873 0.68 0.806518
Target:  5'- aCCGCCGcCGcggcagcaaccaccGCCGCCG-CGAcaGCCg -3'
miRNA:   3'- gGGUGGCaGC--------------UGGCGGCaGCUagCGG- -5'
10969 3' -58.7 NC_002794.1 + 16915 0.78 0.325468
Target:  5'- aUCCgaGCCGcCGACUGUCGUCGG-CGCCg -3'
miRNA:   3'- -GGG--UGGCaGCUGGCGGCAGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 17096 0.67 0.840825
Target:  5'- cCUCGCCGaCGuuC-CCGaCGAUCGCCu -3'
miRNA:   3'- -GGGUGGCaGCugGcGGCaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 17211 0.67 0.862963
Target:  5'- aCCGCCGcCGccaccACCGCCGcCac-CGCCg -3'
miRNA:   3'- gGGUGGCaGC-----UGGCGGCaGcuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 17413 0.68 0.833104
Target:  5'- gCCACCG-CGGCCaucGCgGUCuccgCGCCg -3'
miRNA:   3'- gGGUGGCaGCUGG---CGgCAGcua-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 17454 0.67 0.865793
Target:  5'- gCCCGCgaccgagGUCGAagguucgcuccacaCGCCGcguuugCGAUCGCCg -3'
miRNA:   3'- -GGGUGg------CAGCUg-------------GCGGCa-----GCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 17642 0.77 0.354084
Target:  5'- uCCCGCCGccgCGGCCGCCGcCac-CGCCg -3'
miRNA:   3'- -GGGUGGCa--GCUGGCGGCaGcuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 18255 0.66 0.896138
Target:  5'- gCCgACCGgCGACCGCgagaugCG-CGG-CGCCg -3'
miRNA:   3'- -GGgUGGCaGCUGGCG------GCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 18661 0.66 0.889895
Target:  5'- aCgACCGUCG-CCGCUuccUCGGcUGCCg -3'
miRNA:   3'- gGgUGGCAGCuGGCGGc--AGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 18803 0.69 0.750869
Target:  5'- cCCCGCCGgccaacgggucggCGACCucgGCCGgcgcggaggagaccUCGAgcgCGCCg -3'
miRNA:   3'- -GGGUGGCa------------GCUGG---CGGC--------------AGCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 19260 0.68 0.833104
Target:  5'- aCCgGCCG-CGGCCcCCGUgGcgCGUCu -3'
miRNA:   3'- -GGgUGGCaGCUGGcGGCAgCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 19492 0.67 0.840825
Target:  5'- cCCgCACCGaCGACggcggaggucgCGCCGcUCGGagCGCCg -3'
miRNA:   3'- -GG-GUGGCaGCUG-----------GCGGC-AGCUa-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 20209 0.68 0.817186
Target:  5'- gCCgCACCGcCGACCGCCauggcUCuccgCGCCu -3'
miRNA:   3'- -GG-GUGGCaGCUGGCGGc----AGcua-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 20876 0.69 0.7661
Target:  5'- cCCCGCgagucaCGUCGACCuccuUCGUCGGgaacgaccacuuUCGCCg -3'
miRNA:   3'- -GGGUG------GCAGCUGGc---GGCAGCU------------AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 21383 0.66 0.894906
Target:  5'- gCCGCCGUCucuuccucggacACCGCCGgcuccaCGAUCucgaGCCc -3'
miRNA:   3'- gGGUGGCAGc-----------UGGCGGCa-----GCUAG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.