miRNA display CGI


Results 41 - 60 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 21699 0.68 0.822827
Target:  5'- cCCCGCC-UCGGCguccacgggcgcugCGUCG-CGAUCGCg -3'
miRNA:   3'- -GGGUGGcAGCUG--------------GCGGCaGCUAGCGg -5'
10969 3' -58.7 NC_002794.1 + 21956 0.75 0.450052
Target:  5'- --gGCCGUCGGCCgcucccgcggcGCCGUCGucuccgcgacccGUCGCCg -3'
miRNA:   3'- gggUGGCAGCUGG-----------CGGCAGC------------UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 22562 0.71 0.644654
Target:  5'- aCCGCCGacacggcaCGGCCGCUGUCcaaGUCGCg -3'
miRNA:   3'- gGGUGGCa-------GCUGGCGGCAGc--UAGCGg -5'
10969 3' -58.7 NC_002794.1 + 22803 0.72 0.624484
Target:  5'- aCCgACCGcUCGACuCaCCGUCGucuucgcGUCGCCg -3'
miRNA:   3'- -GGgUGGC-AGCUG-GcGGCAGC-------UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 23603 0.7 0.711243
Target:  5'- aUCCGCCGaccCGACC-CCG-CGggCGCCc -3'
miRNA:   3'- -GGGUGGCa--GCUGGcGGCaGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 23989 0.78 0.297957
Target:  5'- gCCACCGUCGcuccguccgacggGCCGCCGUCaccgcggCGCCu -3'
miRNA:   3'- gGGUGGCAGC-------------UGGCGGCAGcua----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 24094 0.66 0.883453
Target:  5'- gUCGCCGUauuaaaGACCGCgacCGAUCGUCc -3'
miRNA:   3'- gGGUGGCAg-----CUGGCGgcaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 26095 0.75 0.441511
Target:  5'- -gCGCCGaCGGCC-CCGgCGAUCGCCg -3'
miRNA:   3'- ggGUGGCaGCUGGcGGCaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 27612 0.66 0.889895
Target:  5'- gUCCACCcgGUCgGACgGCCGgUCGGUCaaGCg -3'
miRNA:   3'- -GGGUGG--CAG-CUGgCGGC-AGCUAG--CGg -5'
10969 3' -58.7 NC_002794.1 + 28658 0.72 0.615843
Target:  5'- uCCCGCgGgcccCGgaACCGCCGcCGGUgGCCg -3'
miRNA:   3'- -GGGUGgCa---GC--UGGCGGCaGCUAgCGG- -5'
10969 3' -58.7 NC_002794.1 + 28696 0.83 0.156952
Target:  5'- gCCGCCGUUGcugcuGCUGCCGUCG-UCGCCg -3'
miRNA:   3'- gGGUGGCAGC-----UGGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 29210 0.82 0.172651
Target:  5'- uCCgGCgGUCGGCgGCCGUCGGcCGCCg -3'
miRNA:   3'- -GGgUGgCAGCUGgCGGCAGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 30329 0.68 0.792214
Target:  5'- --gAUCGUCG-CCGaaGUCGAUgGCCa -3'
miRNA:   3'- gggUGGCAGCuGGCggCAGCUAgCGG- -5'
10969 3' -58.7 NC_002794.1 + 30605 0.67 0.85576
Target:  5'- aCCCuuccaacguguaGCUGUCGACCGgCGaggCGAagGCUa -3'
miRNA:   3'- -GGG------------UGGCAGCUGGCgGCa--GCUagCGG- -5'
10969 3' -58.7 NC_002794.1 + 31343 0.74 0.48509
Target:  5'- gCCCGCCGUguccgcCGcCCGCuCGUCGAagUCGUCc -3'
miRNA:   3'- -GGGUGGCA------GCuGGCG-GCAGCU--AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 31399 0.76 0.392282
Target:  5'- cCCCGCCG-CGcCCGCCG-CGccCGCCg -3'
miRNA:   3'- -GGGUGGCaGCuGGCGGCaGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 32292 0.68 0.817186
Target:  5'- -aCGCCGcCG-CCGCCGcggCGGccgCGCCg -3'
miRNA:   3'- ggGUGGCaGCuGGCGGCa--GCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 32447 0.7 0.701849
Target:  5'- aUCACCGUCGugC-CCGUgaCGAcgcaguucagauUCGCCg -3'
miRNA:   3'- gGGUGGCAGCugGcGGCA--GCU------------AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 32649 0.66 0.908013
Target:  5'- aCgACCGgggCGACggCGCCGUCcccGUCGUCc -3'
miRNA:   3'- gGgUGGCa--GCUG--GCGGCAGc--UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 32807 0.74 0.48509
Target:  5'- uUCGCCG-CGACCGUCGUCu-UCGUCg -3'
miRNA:   3'- gGGUGGCaGCUGGCGGCAGcuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.