miRNA display CGI


Results 1 - 20 of 408 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 195573 0.69 0.748153
Target:  5'- gCCGCCccgacCGACCGCCGgaccggcCGAcgCGCCc -3'
miRNA:   3'- gGGUGGca---GCUGGCGGCa------GCUa-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 195299 0.7 0.711243
Target:  5'- aCCGCUGcaCGcACCGCCG-CG-UCGCCu -3'
miRNA:   3'- gGGUGGCa-GC-UGGCGGCaGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 195007 0.66 0.889895
Target:  5'- cCCUGCCGggCGAacuccUCGaaGUCGcgCGCCg -3'
miRNA:   3'- -GGGUGGCa-GCU-----GGCggCAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 194041 0.81 0.213167
Target:  5'- gCCCGCCGcCGccgccGCCGCCGcCGAgagCGCCg -3'
miRNA:   3'- -GGGUGGCaGC-----UGGCGGCaGCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 194000 0.7 0.727999
Target:  5'- gCCC-CCGgcuucgccuucgCGGCCGCCGcCGccggCGCCu -3'
miRNA:   3'- -GGGuGGCa-----------GCUGGCGGCaGCua--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 193970 0.77 0.339558
Target:  5'- aCCGCCGUC-ACCGCCG-CGGcCGCUa -3'
miRNA:   3'- gGGUGGCAGcUGGCGGCaGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 193937 0.66 0.902179
Target:  5'- aCCGCCGgcucCGGCC-CCGcCGccacCGCCg -3'
miRNA:   3'- gGGUGGCa---GCUGGcGGCaGCua--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 193810 0.68 0.809001
Target:  5'- gCCCGCuCGUCuggcGCCGaCgCGUCGcggCGCCg -3'
miRNA:   3'- -GGGUG-GCAGc---UGGC-G-GCAGCua-GCGG- -5'
10969 3' -58.7 NC_002794.1 + 193770 0.72 0.577607
Target:  5'- cCCCGCuCGcUCGcCCGC--UCGAUCGCCc -3'
miRNA:   3'- -GGGUG-GC-AGCuGGCGgcAGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 193595 0.66 0.896138
Target:  5'- gCUCACCGUCGuguagcguACCGCgG-CGccGUgGCCa -3'
miRNA:   3'- -GGGUGGCAGC--------UGGCGgCaGC--UAgCGG- -5'
10969 3' -58.7 NC_002794.1 + 193414 0.72 0.59668
Target:  5'- cUCCGCCGcCG-CCGcCCGUCGuccaGCCg -3'
miRNA:   3'- -GGGUGGCaGCuGGC-GGCAGCuag-CGG- -5'
10969 3' -58.7 NC_002794.1 + 193387 0.78 0.298606
Target:  5'- cCUCGCCGUCGuCCGCCucgCGcUCGCCu -3'
miRNA:   3'- -GGGUGGCAGCuGGCGGca-GCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 192673 0.68 0.817186
Target:  5'- aCUCGaagCGcCGGCCGCCGUCGuaCGUCu -3'
miRNA:   3'- -GGGUg--GCaGCUGGCGGCAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 192439 0.67 0.869982
Target:  5'- gCCgGCgCGUCG-CgCGCCucgcaGUCGcgCGCCa -3'
miRNA:   3'- -GGgUG-GCAGCuG-GCGG-----CAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 192366 0.68 0.825222
Target:  5'- gCCGCCGcCGACCGagCG-CGGgcugacCGCCa -3'
miRNA:   3'- gGGUGGCaGCUGGCg-GCaGCUa-----GCGG- -5'
10969 3' -58.7 NC_002794.1 + 192134 0.7 0.692403
Target:  5'- gCUGCUGUUGcuGCUGCCGgcgCGGUCGCg -3'
miRNA:   3'- gGGUGGCAGC--UGGCGGCa--GCUAGCGg -5'
10969 3' -58.7 NC_002794.1 + 191804 0.66 0.889895
Target:  5'- aCCGcCCGcUCGGCCGCuCGagGAcCGCg -3'
miRNA:   3'- gGGU-GGC-AGCUGGCG-GCagCUaGCGg -5'
10969 3' -58.7 NC_002794.1 + 191642 0.68 0.809001
Target:  5'- cCUCGCCGUCcagcagcCCGCCGggggaCGG-CGCCg -3'
miRNA:   3'- -GGGUGGCAGcu-----GGCGGCa----GCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 190670 0.67 0.840825
Target:  5'- gCCCGCCG-CG-CCGCCG--GGUCuCCa -3'
miRNA:   3'- -GGGUGGCaGCuGGCGGCagCUAGcGG- -5'
10969 3' -58.7 NC_002794.1 + 190541 0.66 0.889895
Target:  5'- gUCCACCaG-CGGuCCG-CGUCcGUCGCCg -3'
miRNA:   3'- -GGGUGG-CaGCU-GGCgGCAGcUAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.