miRNA display CGI


Results 21 - 40 of 408 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 3' -58.7 NC_002794.1 + 190110 0.7 0.711243
Target:  5'- cCCCGCCGUCcgcGCCgaaGCgGUCcGcgCGCCg -3'
miRNA:   3'- -GGGUGGCAGc--UGG---CGgCAG-CuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 189898 0.82 0.18533
Target:  5'- gCCCGCCGUCagcGCCGCCGcgCGAcCGCCc -3'
miRNA:   3'- -GGGUGGCAGc--UGGCGGCa-GCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 189834 0.69 0.7661
Target:  5'- aCCGCCacagcggggucUCGGCCgcggaGCCGUCGGcgucgUCGCCg -3'
miRNA:   3'- gGGUGGc----------AGCUGG-----CGGCAGCU-----AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 189799 0.71 0.654249
Target:  5'- aUCGCCGUCGaACC-CCGgCGGgcgCGCCa -3'
miRNA:   3'- gGGUGGCAGC-UGGcGGCaGCUa--GCGG- -5'
10969 3' -58.7 NC_002794.1 + 189566 0.69 0.7661
Target:  5'- uCCCGCUcgGUCGGCCGgcCCGggcCGG-CGCCc -3'
miRNA:   3'- -GGGUGG--CAGCUGGC--GGCa--GCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 189025 0.66 0.908013
Target:  5'- gCCaggaGCCGcUCGACCGCCagcggCGGgcugCGCg -3'
miRNA:   3'- -GGg---UGGC-AGCUGGCGGca---GCUa---GCGg -5'
10969 3' -58.7 NC_002794.1 + 188588 0.69 0.748153
Target:  5'- gCCCGCCGcuccaCGGCCGCC-UUG--CGCCg -3'
miRNA:   3'- -GGGUGGCa----GCUGGCGGcAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 188335 0.74 0.467401
Target:  5'- gCCGCCGcCGGCggCGCCGUCG--CGCCc -3'
miRNA:   3'- gGGUGGCaGCUG--GCGGCAGCuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 188299 0.66 0.883453
Target:  5'- gCgCGCCGgaccCGGcCCGUCGUCG-UCGUCc -3'
miRNA:   3'- -GgGUGGCa---GCU-GGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 188211 0.67 0.848379
Target:  5'- --aACCGUCGuccUCGUCGUCG-UCGUCa -3'
miRNA:   3'- gggUGGCAGCu--GGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 187925 0.73 0.530617
Target:  5'- cCCCGCCG-CGACCGUCG-CGucaCGCg -3'
miRNA:   3'- -GGGUGGCaGCUGGCGGCaGCua-GCGg -5'
10969 3' -58.7 NC_002794.1 + 187743 0.8 0.24452
Target:  5'- -gCACCGUCGccaucuccgaacGCCGCCGgcgcCGGUCGCCu -3'
miRNA:   3'- ggGUGGCAGC------------UGGCGGCa---GCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 187577 0.89 0.062905
Target:  5'- aCCCGCCGUCGgcgcgGCCGCCGUCGcgacgcccggcGUCGCCc -3'
miRNA:   3'- -GGGUGGCAGC-----UGGCGGCAGC-----------UAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 187535 0.78 0.298606
Target:  5'- cCCCGCCGccgCGACCGCCGcCac-CGCCg -3'
miRNA:   3'- -GGGUGGCa--GCUGGCGGCaGcuaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 187444 0.77 0.332458
Target:  5'- gCCgCGCCGUCuGCCGCCGcUCGGcgUCGCUc -3'
miRNA:   3'- -GG-GUGGCAGcUGGCGGC-AGCU--AGCGG- -5'
10969 3' -58.7 NC_002794.1 + 186800 0.7 0.720579
Target:  5'- gCCGCgGUaCGccuCCGCCGUC-AUCGUCa -3'
miRNA:   3'- gGGUGgCA-GCu--GGCGGCAGcUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 186396 0.67 0.85576
Target:  5'- gCCgcaGCCG-CGGCCGCaccaGUCGG-CGUCg -3'
miRNA:   3'- -GGg--UGGCaGCUGGCGg---CAGCUaGCGG- -5'
10969 3' -58.7 NC_002794.1 + 186369 0.85 0.11733
Target:  5'- gCCGCCGcCG-CCGCCGUCG-UCGCCg -3'
miRNA:   3'- gGGUGGCaGCuGGCGGCAGCuAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 186290 0.71 0.654249
Target:  5'- -gCACCG-CGGCCagGCgGcCGGUCGCCg -3'
miRNA:   3'- ggGUGGCaGCUGG--CGgCaGCUAGCGG- -5'
10969 3' -58.7 NC_002794.1 + 186105 0.72 0.615843
Target:  5'- gUCGCCGUCG-CCGCCGcCgGGUCcCCg -3'
miRNA:   3'- gGGUGGCAGCuGGCGGCaG-CUAGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.