miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10969 5' -59 NC_002794.1 + 91147 0.66 0.831903
Target:  5'- cGGACgGUgCUGCUGGg-CGcCGugGAGg -3'
miRNA:   3'- aCCUG-CAgGACGACCgaGC-GCugCUU- -5'
10969 5' -59 NC_002794.1 + 38255 0.66 0.831903
Target:  5'- gGGGCcUCCUGCgugaGGCgcggcccccgCGCGACGu- -3'
miRNA:   3'- aCCUGcAGGACGa---CCGa---------GCGCUGCuu -5'
10969 5' -59 NC_002794.1 + 91241 0.66 0.823705
Target:  5'- cGGcCGUCggGCUGcGCUCGCgGACGc- -3'
miRNA:   3'- aCCuGCAGgaCGAC-CGAGCG-CUGCuu -5'
10969 5' -59 NC_002794.1 + 93776 0.66 0.823705
Target:  5'- cGGACGcgCgUGCUGGCggCGCu-CGAGu -3'
miRNA:   3'- aCCUGCa-GgACGACCGa-GCGcuGCUU- -5'
10969 5' -59 NC_002794.1 + 80610 0.66 0.815343
Target:  5'- cGGACGgacucugCCUGCcGGCcgagcaccUCGCGACc-- -3'
miRNA:   3'- aCCUGCa------GGACGaCCG--------AGCGCUGcuu -5'
10969 5' -59 NC_002794.1 + 63669 0.66 0.815343
Target:  5'- cGGACGaCgaGCgcGGC-CGCGGCGAc -3'
miRNA:   3'- aCCUGCaGgaCGa-CCGaGCGCUGCUu -5'
10969 5' -59 NC_002794.1 + 117374 0.66 0.806823
Target:  5'- cGGGcCG-CCUGCacGgUCGCGGCGAAg -3'
miRNA:   3'- aCCU-GCaGGACGacCgAGCGCUGCUU- -5'
10969 5' -59 NC_002794.1 + 32503 0.66 0.806823
Target:  5'- -cGACGUCUUGCcGGCUCccgccgugccgGUGAUGAGc -3'
miRNA:   3'- acCUGCAGGACGaCCGAG-----------CGCUGCUU- -5'
10969 5' -59 NC_002794.1 + 140092 0.66 0.798154
Target:  5'- aGGACGUCCa--UGGUcgGCGGCGAu -3'
miRNA:   3'- aCCUGCAGGacgACCGagCGCUGCUu -5'
10969 5' -59 NC_002794.1 + 105533 0.67 0.789342
Target:  5'- cGGACGugagaUCCgGCggcGGCUCG-GGCGAAc -3'
miRNA:   3'- aCCUGC-----AGGaCGa--CCGAGCgCUGCUU- -5'
10969 5' -59 NC_002794.1 + 182933 0.67 0.789342
Target:  5'- cUGGAaguaGUCCgGCgccgGGCUCGagcCGACGGc -3'
miRNA:   3'- -ACCUg---CAGGaCGa---CCGAGC---GCUGCUu -5'
10969 5' -59 NC_002794.1 + 86962 0.67 0.780397
Target:  5'- -cGACGUCC-GCUgcGGCgagcUGCGACGAGg -3'
miRNA:   3'- acCUGCAGGaCGA--CCGa---GCGCUGCUU- -5'
10969 5' -59 NC_002794.1 + 111733 0.67 0.771325
Target:  5'- cGGGCGaacgcgcucgUCgaGCUGGCgccgCGCGGCGc- -3'
miRNA:   3'- aCCUGC----------AGgaCGACCGa---GCGCUGCuu -5'
10969 5' -59 NC_002794.1 + 26649 0.67 0.762137
Target:  5'- cGGACGgcg-GCcGGCUCGuCGGCGGGg -3'
miRNA:   3'- aCCUGCaggaCGaCCGAGC-GCUGCUU- -5'
10969 5' -59 NC_002794.1 + 148132 0.67 0.762137
Target:  5'- cGGGCGcggggccgCCgggGCgagGGCggUCGCGACGGAa -3'
miRNA:   3'- aCCUGCa-------GGa--CGa--CCG--AGCGCUGCUU- -5'
10969 5' -59 NC_002794.1 + 63998 0.67 0.74344
Target:  5'- cGGGCuccgucuggGUCCUGC-GGCUgGCGAUGu- -3'
miRNA:   3'- aCCUG---------CAGGACGaCCGAgCGCUGCuu -5'
10969 5' -59 NC_002794.1 + 13419 0.68 0.732995
Target:  5'- cUGGACGcucugggUCCUcucCUGGCUCcCGACGAc -3'
miRNA:   3'- -ACCUGC-------AGGAc--GACCGAGcGCUGCUu -5'
10969 5' -59 NC_002794.1 + 136109 0.68 0.724375
Target:  5'- -cGGCGUCCUGCaccUGGCggGCGAaguCGAAg -3'
miRNA:   3'- acCUGCAGGACG---ACCGagCGCU---GCUU- -5'
10969 5' -59 NC_002794.1 + 93713 0.68 0.723413
Target:  5'- cUGGuCGaCCUGCUGuugcgccGCUCGCGccGCGAGa -3'
miRNA:   3'- -ACCuGCaGGACGAC-------CGAGCGC--UGCUU- -5'
10969 5' -59 NC_002794.1 + 145782 0.68 0.714725
Target:  5'- cGGAguCGUCCccgGCcGGCUCGgaCGACGAc -3'
miRNA:   3'- aCCU--GCAGGa--CGaCCGAGC--GCUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.