Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10969 | 5' | -59 | NC_002794.1 | + | 140092 | 0.66 | 0.798154 |
Target: 5'- aGGACGUCCa--UGGUcgGCGGCGAu -3' miRNA: 3'- aCCUGCAGGacgACCGagCGCUGCUu -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 32503 | 0.66 | 0.806823 |
Target: 5'- -cGACGUCUUGCcGGCUCccgccgugccgGUGAUGAGc -3' miRNA: 3'- acCUGCAGGACGaCCGAG-----------CGCUGCUU- -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 117374 | 0.66 | 0.806823 |
Target: 5'- cGGGcCG-CCUGCacGgUCGCGGCGAAg -3' miRNA: 3'- aCCU-GCaGGACGacCgAGCGCUGCUU- -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 63669 | 0.66 | 0.815343 |
Target: 5'- cGGACGaCgaGCgcGGC-CGCGGCGAc -3' miRNA: 3'- aCCUGCaGgaCGa-CCGaGCGCUGCUu -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 80610 | 0.66 | 0.815343 |
Target: 5'- cGGACGgacucugCCUGCcGGCcgagcaccUCGCGACc-- -3' miRNA: 3'- aCCUGCa------GGACGaCCG--------AGCGCUGcuu -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 91241 | 0.66 | 0.823705 |
Target: 5'- cGGcCGUCggGCUGcGCUCGCgGACGc- -3' miRNA: 3'- aCCuGCAGgaCGAC-CGAGCG-CUGCuu -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 93776 | 0.66 | 0.823705 |
Target: 5'- cGGACGcgCgUGCUGGCggCGCu-CGAGu -3' miRNA: 3'- aCCUGCa-GgACGACCGa-GCGcuGCUU- -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 38255 | 0.66 | 0.831903 |
Target: 5'- gGGGCcUCCUGCgugaGGCgcggcccccgCGCGACGu- -3' miRNA: 3'- aCCUGcAGGACGa---CCGa---------GCGCUGCuu -5' |
|||||||
10969 | 5' | -59 | NC_002794.1 | + | 91147 | 0.66 | 0.831903 |
Target: 5'- cGGACgGUgCUGCUGGg-CGcCGugGAGg -3' miRNA: 3'- aCCUG-CAgGACGACCgaGC-GCugCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home