Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10969 | 5' | -59 | NC_002794.1 | + | 13419 | 0.68 | 0.732995 |
Target: 5'- cUGGACGcucugggUCCUcucCUGGCUCcCGACGAc -3' miRNA: 3'- -ACCUGC-------AGGAc--GACCGAGcGCUGCUu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 26649 | 0.67 | 0.762137 |
Target: 5'- cGGACGgcg-GCcGGCUCGuCGGCGGGg -3' miRNA: 3'- aCCUGCaggaCGaCCGAGC-GCUGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 32503 | 0.66 | 0.806823 |
Target: 5'- -cGACGUCUUGCcGGCUCccgccgugccgGUGAUGAGc -3' miRNA: 3'- acCUGCAGGACGaCCGAG-----------CGCUGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 38255 | 0.66 | 0.831903 |
Target: 5'- gGGGCcUCCUGCgugaGGCgcggcccccgCGCGACGu- -3' miRNA: 3'- aCCUGcAGGACGa---CCGa---------GCGCUGCuu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 53847 | 0.69 | 0.665645 |
Target: 5'- cGGGCGUCUcgGCggGGUUCuCGACGAc -3' miRNA: 3'- aCCUGCAGGa-CGa-CCGAGcGCUGCUu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 63669 | 0.66 | 0.815343 |
Target: 5'- cGGACGaCgaGCgcGGC-CGCGGCGAc -3' miRNA: 3'- aCCUGCaGgaCGa-CCGaGCGCUGCUu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 63998 | 0.67 | 0.74344 |
Target: 5'- cGGGCuccgucuggGUCCUGC-GGCUgGCGAUGu- -3' miRNA: 3'- aCCUG---------CAGGACGaCCGAgCGCUGCuu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 80610 | 0.66 | 0.815343 |
Target: 5'- cGGACGgacucugCCUGCcGGCcgagcaccUCGCGACc-- -3' miRNA: 3'- aCCUGCa------GGACGaCCG--------AGCGCUGcuu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 80723 | 0.7 | 0.615915 |
Target: 5'- uUGGACGUCgacCUGGCccucCGCGACGGGg -3' miRNA: 3'- -ACCUGCAGgacGACCGa---GCGCUGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 86962 | 0.67 | 0.780397 |
Target: 5'- -cGACGUCC-GCUgcGGCgagcUGCGACGAGg -3' miRNA: 3'- acCUGCAGGaCGA--CCGa---GCGCUGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 91147 | 0.66 | 0.831903 |
Target: 5'- cGGACgGUgCUGCUGGg-CGcCGugGAGg -3' miRNA: 3'- aCCUG-CAgGACGACCgaGC-GCugCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 91241 | 0.66 | 0.823705 |
Target: 5'- cGGcCGUCggGCUGcGCUCGCgGACGc- -3' miRNA: 3'- aCCuGCAGgaCGAC-CGAGCG-CUGCuu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 93713 | 0.68 | 0.723413 |
Target: 5'- cUGGuCGaCCUGCUGuugcgccGCUCGCGccGCGAGa -3' miRNA: 3'- -ACCuGCaGGACGAC-------CGAGCGC--UGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 93776 | 0.66 | 0.823705 |
Target: 5'- cGGACGcgCgUGCUGGCggCGCu-CGAGu -3' miRNA: 3'- aCCUGCa-GgACGACCGa-GCGcuGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 105533 | 0.67 | 0.789342 |
Target: 5'- cGGACGugagaUCCgGCggcGGCUCG-GGCGAAc -3' miRNA: 3'- aCCUGC-----AGGaCGa--CCGAGCgCUGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 111733 | 0.67 | 0.771325 |
Target: 5'- cGGGCGaacgcgcucgUCgaGCUGGCgccgCGCGGCGc- -3' miRNA: 3'- aCCUGC----------AGgaCGACCGa---GCGCUGCuu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 117374 | 0.66 | 0.806823 |
Target: 5'- cGGGcCG-CCUGCacGgUCGCGGCGAAg -3' miRNA: 3'- aCCU-GCaGGACGacCgAGCGCUGCUU- -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 122646 | 0.7 | 0.625867 |
Target: 5'- gUGGACGUgaucuaCCUGCUGGCggCGCaGGCc-- -3' miRNA: 3'- -ACCUGCA------GGACGACCGa-GCG-CUGcuu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 125900 | 0.68 | 0.705009 |
Target: 5'- cUGGcCGUCCUcGcCUGGC-CGCGACu-- -3' miRNA: 3'- -ACCuGCAGGA-C-GACCGaGCGCUGcuu -5' |
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10969 | 5' | -59 | NC_002794.1 | + | 126380 | 0.7 | 0.586158 |
Target: 5'- gUGGGCGccggggCCUGCgcggcGGCgugCGCGGCGGu -3' miRNA: 3'- -ACCUGCa-----GGACGa----CCGa--GCGCUGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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