miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1097 5' -47.2 NC_000929.1 + 30947 1.12 0.002294
Target:  5'- uAAAAGCCCCGACAGCAAAUUAUCUGCg -3'
miRNA:   3'- -UUUUCGGGGCUGUCGUUUAAUAGACG- -5'
1097 5' -47.2 NC_000929.1 + 30975 0.8 0.294733
Target:  5'- -cAAGCCCUGACGGCAguAAUUgcagaaaggccGUCUGCc -3'
miRNA:   3'- uuUUCGGGGCUGUCGU--UUAA-----------UAGACG- -5'
1097 5' -47.2 NC_000929.1 + 9672 0.78 0.347099
Target:  5'- -cAGGCaCCCGGCAGCucAUUAUCaGCg -3'
miRNA:   3'- uuUUCG-GGGCUGUCGuuUAAUAGaCG- -5'
1097 5' -47.2 NC_000929.1 + 29265 0.73 0.60005
Target:  5'- uAAAAGCCaguuCGACAGCAAuAUUA-CUGCc -3'
miRNA:   3'- -UUUUCGGg---GCUGUCGUU-UAAUaGACG- -5'
1097 5' -47.2 NC_000929.1 + 1869 0.73 0.624491
Target:  5'- cGAGGaugCCUGGCAguuucugauuGCAGAUUAUCUGCg -3'
miRNA:   3'- uUUUCg--GGGCUGU----------CGUUUAAUAGACG- -5'
1097 5' -47.2 NC_000929.1 + 20261 0.71 0.733244
Target:  5'- ---cGUgCCGACAGCGugcUGUCUGUg -3'
miRNA:   3'- uuuuCGgGGCUGUCGUuuaAUAGACG- -5'
1097 5' -47.2 NC_000929.1 + 30403 0.71 0.744906
Target:  5'- --cAGCCgUGACAGCAGcuccgCUGCa -3'
miRNA:   3'- uuuUCGGgGCUGUCGUUuaauaGACG- -5'
1097 5' -47.2 NC_000929.1 + 27814 0.7 0.789989
Target:  5'- aAGAAGUucacgcuggaaaUCgGGgGGCAGAUUGUCUGCa -3'
miRNA:   3'- -UUUUCG------------GGgCUgUCGUUUAAUAGACG- -5'
1097 5' -47.2 NC_000929.1 + 25521 0.7 0.800789
Target:  5'- --uGGCCCgGACAGCAAuaacggCUGg -3'
miRNA:   3'- uuuUCGGGgCUGUCGUUuaaua-GACg -5'
1097 5' -47.2 NC_000929.1 + 31752 0.69 0.831824
Target:  5'- ---uGCCCCGGCAGUuuuAAUUucgCUGg -3'
miRNA:   3'- uuuuCGGGGCUGUCGu--UUAAua-GACg -5'
1097 5' -47.2 NC_000929.1 + 5323 0.68 0.894631
Target:  5'- uGAAGCCCgUGAaauguGGCAGcgUAUCUGg -3'
miRNA:   3'- uUUUCGGG-GCUg----UCGUUuaAUAGACg -5'
1097 5' -47.2 NC_000929.1 + 14847 0.67 0.909746
Target:  5'- aAAAAGaCgCCGACAuGCuGAAUgaaUAUCUGCa -3'
miRNA:   3'- -UUUUC-GgGGCUGU-CG-UUUA---AUAGACG- -5'
1097 5' -47.2 NC_000929.1 + 25182 0.67 0.916799
Target:  5'- uAAAGCCCUGAgAGCAGGcUGg--GCc -3'
miRNA:   3'- uUUUCGGGGCUgUCGUUUaAUagaCG- -5'
1097 5' -47.2 NC_000929.1 + 5819 0.67 0.923512
Target:  5'- cAAGAGUgCCG-CAGCGGcUUAUgUGCc -3'
miRNA:   3'- -UUUUCGgGGCuGUCGUUuAAUAgACG- -5'
1097 5' -47.2 NC_000929.1 + 30118 0.66 0.935912
Target:  5'- -cGGGCCgCUGGCGGCugucgccUGUUUGCg -3'
miRNA:   3'- uuUUCGG-GGCUGUCGuuua---AUAGACG- -5'
1097 5' -47.2 NC_000929.1 + 18381 0.66 0.941047
Target:  5'- --cGGCCCagcagcgcaucgaUGACGGCGAAUUugguuaucucUCUGCg -3'
miRNA:   3'- uuuUCGGG-------------GCUGUCGUUUAAu---------AGACG- -5'
1097 5' -47.2 NC_000929.1 + 20365 0.66 0.941601
Target:  5'- --cAGCCCCccagccuCAGCGAGcguuUCUGCu -3'
miRNA:   3'- uuuUCGGGGcu-----GUCGUUUaau-AGACG- -5'
1097 5' -47.2 NC_000929.1 + 21546 0.66 0.946951
Target:  5'- gAAAAGCCCCGuaACAGUu-----UCUGg -3'
miRNA:   3'- -UUUUCGGGGC--UGUCGuuuaauAGACg -5'
1097 5' -47.2 NC_000929.1 + 22187 0.66 0.951482
Target:  5'- --uGGUUCUGAguGCAAaauuuacgggugcAUUAUCUGCc -3'
miRNA:   3'- uuuUCGGGGCUguCGUU-------------UAAUAGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.