miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 189868 0.66 0.739041
Target:  5'- -gGCGUcgucGCCG-CCGAcCGGCCcGCucgGGCc -3'
miRNA:   3'- gaCGCA----CGGCaGGCU-GCCGGaCG---CCG- -5'
10970 3' -62.2 NC_002794.1 + 89717 0.66 0.739041
Target:  5'- -cGCgGUGCCGaUCCGcGCGGCgU-CGGUc -3'
miRNA:   3'- gaCG-CACGGC-AGGC-UGCCGgAcGCCG- -5'
10970 3' -62.2 NC_002794.1 + 50127 0.66 0.739041
Target:  5'- -----aGCUGUCCGAUGGUCgacagcgggaUGCGGUg -3'
miRNA:   3'- gacgcaCGGCAGGCUGCCGG----------ACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 142121 0.66 0.733534
Target:  5'- uCUGCGacCCGgcggCCGACcGCCgggucacggcggagGCGGCg -3'
miRNA:   3'- -GACGCacGGCa---GGCUGcCGGa-------------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 82058 0.66 0.729847
Target:  5'- -gGCGgcGUCGUCCu-CGGCCUcGcCGGCc -3'
miRNA:   3'- gaCGCa-CGGCAGGcuGCCGGA-C-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 75374 0.66 0.729847
Target:  5'- -----cGCCGcggCCGGCGGCg-GCGGCc -3'
miRNA:   3'- gacgcaCGGCa--GGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 100789 0.66 0.729847
Target:  5'- cCUGCGguucgcgGCCGcuUCUGcgccuACGuGCCggGCGGCg -3'
miRNA:   3'- -GACGCa------CGGC--AGGC-----UGC-CGGa-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 126266 0.66 0.729847
Target:  5'- -gGCG-GCUGgCUGGCGGCgCUG-GGCu -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCG-GACgCCG- -5'
10970 3' -62.2 NC_002794.1 + 113322 0.66 0.729847
Target:  5'- -cGCcggGCCGUCagguagcggaCGugGGCCUGUucguaaGGCg -3'
miRNA:   3'- gaCGca-CGGCAG----------GCugCCGGACG------CCG- -5'
10970 3' -62.2 NC_002794.1 + 185769 0.66 0.729847
Target:  5'- -cGCG-GCCGcCCGucacacguCGGCCggcGCGGg -3'
miRNA:   3'- gaCGCaCGGCaGGCu-------GCCGGa--CGCCg -5'
10970 3' -62.2 NC_002794.1 + 152421 0.66 0.729847
Target:  5'- gCUGCcccggGCCGUCUGuCGGCagCUG-GGCu -3'
miRNA:   3'- -GACGca---CGGCAGGCuGCCG--GACgCCG- -5'
10970 3' -62.2 NC_002794.1 + 63996 0.66 0.720579
Target:  5'- -aGCGggcuCCGUCUG--GGuCCUGCGGCu -3'
miRNA:   3'- gaCGCac--GGCAGGCugCC-GGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 192022 0.66 0.720579
Target:  5'- -cGCGgcUGCUGUUucugUGGCGGCg-GCGGCu -3'
miRNA:   3'- gaCGC--ACGGCAG----GCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 141305 0.66 0.720579
Target:  5'- -gGCGcGCCGg-CGACGGCac-CGGCg -3'
miRNA:   3'- gaCGCaCGGCagGCUGCCGgacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 13788 0.66 0.711243
Target:  5'- -gGUGgcuccgGCCGUCuucgCGACgGGCCcggccgGCGGCg -3'
miRNA:   3'- gaCGCa-----CGGCAG----GCUG-CCGGa-----CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 69017 0.66 0.711243
Target:  5'- -cGCGUGCgCGacgCCGGCGcCCUcGcCGGCu -3'
miRNA:   3'- gaCGCACG-GCa--GGCUGCcGGA-C-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 153347 0.66 0.711243
Target:  5'- -cGCGUGuuGUCaggacGCGGCCcggcUGCGcGCc -3'
miRNA:   3'- gaCGCACggCAGgc---UGCCGG----ACGC-CG- -5'
10970 3' -62.2 NC_002794.1 + 107311 0.66 0.701849
Target:  5'- -cGCGggggcGCCGUCCGcGCGGUU--CGGCu -3'
miRNA:   3'- gaCGCa----CGGCAGGC-UGCCGGacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 129026 0.66 0.701849
Target:  5'- -cGCc-GCCGUCuCGGCGaacuGUCUGCGGUc -3'
miRNA:   3'- gaCGcaCGGCAG-GCUGC----CGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 112270 0.66 0.701849
Target:  5'- -gGCGUcUCGUCCu-CGGCCUccgugucggGCGGCc -3'
miRNA:   3'- gaCGCAcGGCAGGcuGCCGGA---------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.